Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00293 ATGCCCCTTCTCCCTGAAGAGCTAAGGTGCCCAATATCTTTGCAATTTATGTACGATCCTGTAATCATTGCTTTTGGGCAAAACTTACGAAAGAATGGAGTTAATATTCTCGAAGGCCCTCCTGAATCTCTTGATCTTAATTACTGGAGATTGGCATTCAATAAGTCTGAATCCACAAATTCAAGATATGTAAACAGTGTCAGCTCTTGCAAGTTGAAGGGTATTAAAGTGGTTCTATTAGAAGAGAGGGGTACCTTTGAGGAAATTGGGGAAAATAGGGCTGAAAGTGTCTCTACACCAGAGAGAGATATTGAGCCGTACTTAAGTCTTCTGGAAATCTTGACTGACGCTAATAGTTTGAAGAGGAAATGTCCGCCAATTTTTCATGTCACTGCCAGCGGCAGGTTAAATTGGCCAGAGATGgggtga 429 0.4056 MPLLPEELRCPISLQFMYDPVIIAFGQNLRKNGVNILEGPPESLDLNYWRLAFNKSESTNSRYVNSVSSCKLKGIKVVLLEERGTFEEIGENRAESVSTPERDIEPYLSLLEILTDANSLKRKCPPIFHVTASGRLNWPEMG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00293 142 PANTHER U BOX DOMAIN-CONTAINING 1 29 - -
Aip05g00293 142 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 29 - -
Aip05g00293 142 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 31 124 - -
Aip05g00293 142 SUPERFAMILY RING/U-box 4 26 - -
Aip05g00293 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 33 IPR013083 -
Aip05g00293 142 PANTHER U BOX DOMAIN-CONTAINING 31 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00293 Aip-Chr5 3160336 3160891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00293 1 124 U-box Gene Family AT1G27910 42.604 1.55e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00293 - - gmx:100794099 143.28