Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00290 ATGGTTAAAGTTTGGTTCTTGGTGTTGATTATTCTCTCCAATGGATTCTATTCAAATGGGGCAGACATGCAAAATTCCACAGTACCTGAGGTTGTAAATATTGGGGCTCTCTTCTCTTTCAATGGCTCTTTTGGTAGAAGTGTAAAATTTGCTCTAAAGGCTGCAGTTGATGATGTAAATTCTGATCCATCAATTCTTGGTAAAACAAAGCTGAATCTCATACTGCAAGAGGATACAAAATACAGAGGTTTTCTTAGCATTTCTGAGGTTTTGCAGGTTGCGACGAGACATACTGTGGCTATAATTGGTCCCCAGTCATCTGTAACAGCTCATGTCATAGCTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTATCGTTTTCGGCTTTAGACCCTACCCTTCATTCACTTCAGTTTCCATTCTTTATTAGAACAGGTCATAGTGATCTTTATGTGATGACTGCAATAGCAGACTTTGTTGATCACTTTGGGTGGAAAGATGTTATTGCTTTCTATGTGGATGATGATAATGGGAGGAATGGAATCGGAGCTCTAGGCGACAAGCTCGCCGATAGGCGCTGCAGGATCTCGTTTAAGGCAGCTGTGAGTCCTGATGCAACTGATGAGGAGATTACTGATGTGCTTGTTCAGGTGGCTTTGGCAGAGTCAAGAGTTATAGTTCTTCACCTCAACACTCTTTGGAAACTCAAGGTTTTCAATCTTGCAAAGAATCTTGGGATGATGGAAACTGGTTATGTCTGGATAGGTACTACTTTTCTTTCTGCTGTGCTTGATATGGAAAGTCCATTGTCTTCAGATAAAATGGATGATATTCAAGGAGTTATTACATTTCGTGTTTACACACCGGATTCTGAACTCAAAAGAAGGTTTGTTTCTAAGTGGAAGAATTTGACTCAAGCTGATAGTGCTAATGGAGGCCCTCTTGGTTTTACTCCTTTAATTCTATATGCTTATGATACTGTTTATGCTCTTGCACATGCACTTGATTCGTTTTTCAAACAAGGGAACAGAATCACTTTCTCAAATGATTCAAAGTTATCAGTGTTACGCGGTGACAACTTGCATCTTGATGCCTTGAACATCTTCAATGAAGGACCTTCCTTGCGTCAAAGCATTTATGGGGTTAACATGACCGGTGTGACAGGTCCATTCAGCTATACATCTGATGAAAATCTTGCCAATCCTGCATTTGAGATCATCAATGTAATTGGAACAGGCTCTAGGAAGATTGGTTATTGGTCTAACTACTCTGGATTATCAGTTCTTCCTCCAGATACTCTTTATTCCAAGCCTGTTAATAATTCCAGGGAAAGTAAAACTTTACTTCCTGTGATTTGGCCTGGAGACACTGATCAAAAGCCCCGTGGTTGGGTTTTTCCCAACAGTGGAAGGCTATTAAAGATTGGAGTACCAAGAAGGGTTAATTACCATGAATTTGTGTCACCGGTAAAAGGCACTGATATGTTTCAGGGATTCTGCATTGATGTGTTTCTTGCTGCAGTGGATTTGTTGCCTTATGCTGTTCCCTATAAGTTTGTCCCCTTTGGCGACGGTCGCATCAATCCTAGCGCCACAGACCTTGTCCGTCGGATCACAACCGGTGAATTTGATGGTGCTGTTGGTGACATTGCCATTACTACAGAAAGAACAAGGATGGTGGATTTTACACAGCCTTATATTGAGTCTGGTCTAGTTGTAGTTGCACCAGTTAGGAAGGCAGAATCCAATGCTTGGGCGTTTTTGTCGCCGTTTACGCCAATGATGTGGGCTGTCACAGCTATGTTTTTCTTGTTTGTGGGAGCTGTTGTTTGGATATTGGAGCATAGAGTTAATGATGACTTTAGGGGACCTCCCAAGAAACAAGTAGTTACTATCTTATGGTTCAGTTTTTCAACTATGTTCTACTCACACAGGGAAAATACAGTTAGCACGCTCGGTCGCTTGGTGCTGATTATATGGTTATTTGTAGTTCTTATAGTTAACTCGAGTTACACAGCGAGTCTAACCTCAATCCTCACAGTGCAACAACTTTATTCACCCATCAAAGGCATTGAAAGTTTGGTAAATAGCAAGGATCCTATTGGTTACACTCAAGGTTCTTTCGCGAAAAATTATTTGATTCAGGAAATTGGCATTGCTGAAGCGAGGCTGGTTCCTTTGAACACGCCGGATGAAGCTGCTAATGCTCTTAAAAAGGGTCCCCATGGTGGTGGTGTCTCTGCATACATTGATGAACGTTCCTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTCACTGTTATTGGTCAAGAGTTCACTAGAGATGGTTGGGGATTTGCCTTTCCGCGAGACTCGCCTTTAGCAGTAGACCTGTCAACAGCAATTCTGGAAATGGCAGAGAATGGAGACCTACAAAGGATCCATGACAAGTGGCTTCTGCGCAGCGCCTGCTTGTCGCAAGGCACGAAGCTGGAAGTGGAAAGACTAAATCTTCAAAGCTTCTGGGGCCTCTATCTGCTATGTGGCTTTGCCTGCTTCATTGCTCTCTTGATATATCTCATACAAGTGACTAGGCAGTACTTCAAGCATGGCTCTGATGAACTTGACCCTTCAGAGCAGGGCTCATCTTCAGGATCTGCGCGCCTTCGGAGCTTCCTTTCATTTGTGGATGAAAAGGAGGAGACAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAGAAGATCTCATACAGAAGCAGCATTGGATCATCCATGAGCTCAAACAAAGACTATGCTCAATCTTCTCCATACAAAAATTATTGTGCTAATGATGCTCCAGCTTCTCCACACACAACTGATTGTGCTAATGAAGCATGA 2859 0.425 MVKVWFLVLIILSNGFYSNGADMQNSTVPEVVNIGALFSFNGSFGRSVKFALKAAVDDVNSDPSILGKTKLNLILQEDTKYRGFLSISEVLQVATRHTVAIIGPQSSVTAHVIAHIANELQVPLLSFSALDPTLHSLQFPFFIRTGHSDLYVMTAIADFVDHFGWKDVIAFYVDDDNGRNGIGALGDKLADRRCRISFKAAVSPDATDEEITDVLVQVALAESRVIVLHLNTLWKLKVFNLAKNLGMMETGYVWIGTTFLSAVLDMESPLSSDKMDDIQGVITFRVYTPDSELKRRFVSKWKNLTQADSANGGPLGFTPLILYAYDTVYALAHALDSFFKQGNRITFSNDSKLSVLRGDNLHLDALNIFNEGPSLRQSIYGVNMTGVTGPFSYTSDENLANPAFEIINVIGTGSRKIGYWSNYSGLSVLPPDTLYSKPVNNSRESKTLLPVIWPGDTDQKPRGWVFPNSGRLLKIGVPRRVNYHEFVSPVKGTDMFQGFCIDVFLAAVDLLPYAVPYKFVPFGDGRINPSATDLVRRITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVRKAESNAWAFLSPFTPMMWAVTAMFFLFVGAVVWILEHRVNDDFRGPPKKQVVTILWFSFSTMFYSHRENTVSTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPIKGIESLVNSKDPIGYTQGSFAKNYLIQEIGIAEARLVPLNTPDEAANALKKGPHGGGVSAYIDERSYIELFLSSRCDFTVIGQEFTRDGWGFAFPRDSPLAVDLSTAILEMAENGDLQRIHDKWLLRSACLSQGTKLEVERLNLQSFWGLYLLCGFACFIALLIYLIQVTRQYFKHGSDELDPSEQGSSSGSARLRSFLSFVDEKEETVKSRSKRRQMEKISYRSSIGSSMSSNKDYAQSSPYKNYCANDAPASPHTTDCANEA 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00290 952 MobiDBLite consensus disorder prediction 910 927 - -
Aip05g00290 952 Pfam Bacterial extracellular solute-binding proteins, family 3 493 813 IPR001638 -
Aip05g00290 952 SMART GluR_14 474 815 IPR001320 GO:0015276|GO:0016020
Aip05g00290 952 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 931 - -
Aip05g00290 952 Gene3D - 731 782 - -
Aip05g00290 952 PIRSF IGluLR_plant 1 946 IPR017103 -
Aip05g00290 952 Gene3D - 148 426 - -
Aip05g00290 952 MobiDBLite consensus disorder prediction 897 927 - -
Aip05g00290 952 PANTHER GLUTAMATE RECEPTOR 10 931 - -
Aip05g00290 952 SUPERFAMILY Periplasmic binding protein-like II 447 815 - -
Aip05g00290 952 SUPERFAMILY Periplasmic binding protein-like I 27 465 IPR028082 -
Aip05g00290 952 Gene3D - 584 711 - -
Aip05g00290 952 Gene3D - 783 813 - -
Aip05g00290 952 CDD GluR_Plant 473 813 - -
Aip05g00290 952 CDD PBP1_GABAb_receptor_plant 33 428 IPR044440 -
Aip05g00290 952 Pfam Ligand-gated ion channel 814 846 IPR001320 GO:0015276|GO:0016020
Aip05g00290 952 Pfam Receptor family ligand binding region 51 411 IPR001828 -
Aip05g00290 952 Gene3D - 473 583 - -
Aip05g00290 952 Gene3D - 50 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00290 Aip-Chr5 3144069 3148142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00290 5 914 Ion Channels AT3G51480 57.958 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00290 K05387 - gmx:100785258 1431.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00290 05 3144069 3148142 Aip10g00069 10 643911 647626 PCT