Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00275 ATGTCTCCACCACACTCGCCACTCTCCGCTGCCACCATCATCTTCATCCTCCTGGTCATCCCGGCGGCCACAACCACCACCTCAGCCTCCACCAACTTCAAAACCGAAAAATACACCTGGGGCCCCTTTGACGCCTCCTACAACGACAAATTCTCCGTCATCAACGGCAACATCAACTTCGGCGCCCTCCAGGTCACACCGGAGAGCGTCGGCGACGTCAGCCTCAACAACATCTCCGGCAGAGTCTTCAACGAAGAACCCTTCACTCTCTGGACCGACGATTCCACACTCTTCTCCTTCAACACCTCCTTCCTCGTCAACGTTTTCCGCGTCAACAACGCCATCCCCGGCGAAGGCATCACGTTCCTCATTGCGCCGAATCTCACCCTTCCTAACAACAGCTACGGCGGTTTTCTCGGCCTTACAAACGCCACCACCGACGGCAGCTCCGACAACAAGATCGTCGCCGTTGAGCTCGACACCGTGAAACAGGCCTACGATCCAGACAACAACCACATCGGTCTGAACATCAACTCCGTCAATTCCACCGTCACCGTTCCACTGTCCAAATTCGGTTACGAGATCTCACCAAACGGTACAGCGTTCTACGTGATCTGGATCGACTACGACGGTTCACGCAGGGTCATAAACGTCTTTATGGCTCCCCAGGCCGATAAAAACGATCCAATAGTGGCAAAACCGTCAAAACCGGTGTTGAATTCGACACTAGATCTTCGAGATTTGGTTAGCCAGAAATCCTTTTTCGGATTCTCAGCTTCAACAGGGAAAACCATTGAATTGAACTGCGTCTTGAGATGGAACGTATCAATAGAAACCCTTCCAAAGAAAAGTAGCGGTAATGGGAAGAACAAAGGGATCTCGATTGGGCTTGGTGTGGGCGTTCCTATAGTGGTTATCGGTGTTGGTGGTGTAGGTGTGTTCCTGTGGTGCTGCGTGTTGAGGAAAAAGAGTGATAATGGTTCGAATTCTGAAATTATGGGCGCGCTTAAGAGCTTGCCTGGAACACCGAGGGAGTTTAAGTTTCAAGAATTGAAGAAGGCTACGAATAATTTTGATGAGAAGAACAATAAACTTGGACAGGGTGGGTTTGGTGTGGTTTATAGAGGAACTCTTCCAATGGAGAAGCTTCAAGTGGCCGTTAAGATGTTCTCTAGGGACAAGATGAAGAGCACTGATGATTTCTTGGCTGAACTTACAATCATCAATAGGCTCCGCCACAAGCACCTTGTCAAGTTACTTGGATGGTGCCACAAGAACGGGGTGTTACTCTTAGTGTACGAATACATGCCTAATGGAAGCTTAGACAACCACATTTTCTTTGAAGAAGGAACAAGCAAAACCCCATTAAGTTGGCATCTAAGATATAAGATCATATCAGGGGTGGCTTCTGCATTGAACTATCTACACAACGAGTATGATCAAAAAGTAATCCACAGAGATCTTAAAGCAAGTAATATAATGCTAGACTCCGACTTCAATGCACGGTTAGGCGACTTTGGTTTGGCCCGCGCAATTGAAAACGAAAAAACATCATACGCGGAGCTAGAAGGAGTGCCAGGAACAATGGGCTACATTGCCCCAGAGTGCTTCCACACGGGCAAGGCCACGCGCGAATCCGATGTGTATGGATTTGGCGCGGTCTTGCTGGAGGTGGTGTGTGGACAGAGGCCATGGACAAAGAATTTGGACTATCAGTTTCTTGTGGATTGGGTTTGGCATTTGCACCGCGAGAGACGGATACTAGAGGCAGTGGATCCAAGGCTAGAGAATGAGTTTGAGGCTGAAGAAGCAGAGAGGGTGTTGAAATTGGGGTTAGCATGCTCTCATCCCATTGCAAGTGAGAGGCCTAAGATGCAGACAATTGTTCAGATCATATCAGGGTCAGTTCCTGTTCCTCATGTTTCACCCTTCAAGCCATCTTTTGTGTGGCCTGCTGTGGATCTTGGAAGCTTTGCAAGTGATCTCACATCACTAGCAAACACTGAGTACACTCCAATTAACACACATTCCTCTATGAATCTTGAGTTCTCAAGTAACAGTTCCTTTGTCTAA 2073 0.4829 MSPPHSPLSAATIIFILLVIPAATTTTSASTNFKTEKYTWGPFDASYNDKFSVINGNINFGALQVTPESVGDVSLNNISGRVFNEEPFTLWTDDSTLFSFNTSFLVNVFRVNNAIPGEGITFLIAPNLTLPNNSYGGFLGLTNATTDGSSDNKIVAVELDTVKQAYDPDNNHIGLNINSVNSTVTVPLSKFGYEISPNGTAFYVIWIDYDGSRRVINVFMAPQADKNDPIVAKPSKPVLNSTLDLRDLVSQKSFFGFSASTGKTIELNCVLRWNVSIETLPKKSSGNGKNKGISIGLGVGVPIVVIGVGGVGVFLWCCVLRKKSDNGSNSEIMGALKSLPGTPREFKFQELKKATNNFDEKNNKLGQGGFGVVYRGTLPMEKLQVAVKMFSRDKMKSTDDFLAELTIINRLRHKHLVKLLGWCHKNGVLLLVYEYMPNGSLDNHIFFEEGTSKTPLSWHLRYKIISGVASALNYLHNEYDQKVIHRDLKASNIMLDSDFNARLGDFGLARAIENEKTSYAELEGVPGTMGYIAPECFHTGKATRESDVYGFGAVLLEVVCGQRPWTKNLDYQFLVDWVWHLHRERRILEAVDPRLENEFEAEEAERVLKLGLACSHPIASERPKMQTIVQIISGSVPVPHVSPFKPSFVWPAVDLGSFASDLTSLANTEYTPINTHSSMNLEFSSNSSFV 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00275 690 Gene3D - 41 295 - -
Aip05g00275 690 Pfam Protein tyrosine and serine/threonine kinase 362 631 IPR001245 GO:0004672|GO:0006468
Aip05g00275 690 SUPERFAMILY Concanavalin A-like lectins/glucanases 58 279 IPR013320 -
Aip05g00275 690 ProSitePatterns Legume lectins beta-chain signature. 155 161 IPR019825 -
Aip05g00275 690 ProSiteProfiles Protein kinase domain profile. 359 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00275 690 PANTHER - 14 656 - -
Aip05g00275 690 ProSitePatterns Protein kinases ATP-binding region signature. 365 388 IPR017441 GO:0005524
Aip05g00275 690 CDD lectin_legume_LecRK_Arcelin_ConA 49 277 IPR001220 GO:0030246
Aip05g00275 690 Gene3D Transferase(Phosphotransferase) domain 1 436 636 - -
Aip05g00275 690 SUPERFAMILY Protein kinase-like (PK-like) 340 651 IPR011009 -
Aip05g00275 690 Pfam Legume lectin domain 55 282 IPR001220 GO:0030246
Aip05g00275 690 CDD STKc_IRAK 365 632 - -
Aip05g00275 690 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Aip05g00275 690 SMART serkin_6 359 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00275 690 Gene3D Phosphorylase Kinase; domain 1 343 435 - -
Aip05g00275 690 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 14 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00275 Aip-Chr5 3052072 3056049 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00275 79 643 Receptor kinase-like Gene Family AT5G55830 38.816 1.48e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aip05g00275 PK_Tyr_Ser-Thr 2.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00275 - - gmx:100784558 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00275 05 3052072 3056049 Aip05g00275 05 3052072 3056049 ECH