Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00271 ATGGAGTTTGAATCTCTGAGTCTGGCCAATGAGGTCATTGAATTTGATATGATTGGTTTGGGTGATGATGGTGCCATTGATATTGAACACCATGTTGAAGATGATGATGACTATATCAGTGTTGACAATGTTTTTGCTGCTACTGCCGCCACCAATATAGCTGCCACTGTTGGACCTCAAATTCCTATAGGGGACACAAATCTTGAACCTTATCAGGGTATGGAATTTGAATCAGAAGAGGCTGCTAAGGCGTTTTATAATTCCTATGCTCGCCGCATTGGATTTAGTACGAGGGTGAGCATGTCCCGTCGCTCCAGACGTGATGGTGCTATAATTCAGAGGTCTTTTGTGTGTGCCAAGGAAGGTTTCCGTATGGAGAAGGAGAAGAATTCTCTTGATGGCAGAGTCAAACGACCTCGTGCTGAAACTCGTGTTGGTTGCAAGGCCATGTTGGTTGTGAAAATTCAAGTGTCTGGCAGATGGGTTGTTTCTTCATTTGTCAAGGAGCACAACCATGAATTGGTTCCACCTGATAAGGTGCATTGCCTTCGCTCTCACCGCCATGTTTCGGGTCCAGCTAAATCATTGATTGATACCTTGCAGGGTGCTGGTATAGGGCCTAGTGGAATTATGTCTGCACTTATCAAAGAATATGGTGGAATTAGCAACATTGGGTTCACTGAGCGTGACTGTAGGAACTACATGAGGAGCAGCCGGCAAAGGACCCTTGGTGGTGACACTCAAATCCTCTTGGATTACTTGAAGAGTAAACAAGCTAAGAATCCTTTGTTTTTCTATGCCGTACAAGGTGATGAGGATCGCTACATGAGTAATATCTTCTGGGCTGATCCTAAGGCTAGGACTAACTACACTTATTTTGGTGACACTGTCACATTTGACACAACATATAGGTCAAACCGCTatagattgccttttgcgccttttactggagtaaatcatcacggacagcctgtattatttggttgtgctctcttgataaatgaatccgaagcatcgtttgtctggctcttcaaaatgtggcttgaagcgatgtcagggcaatctccagtctcaatcactactgatcatgatcgggtgattcgtgtagccattaaccatgtctttcctaatacccgtcatcggttttgcaagtggcacattTTTAAAGAGTGCCAAGAGAAGTTGTCTCATGTGCTTTATGAACAAGTTAATTTTGAAGCTGACCTTCATAAATGTGTTAATCTGCCAGAGTCCATTGATGAGTTTGAGTCTTGTTGGTCCTCCCTAATAGATAGTTATAATCTCAGAGAACATGAATGGCTCCAAGCAATTTATGGTGATAGGCGGCAGTGGGTTCCCGTGTACTTGAGAGACACATTTTTTGCAGAAATGTCGATAACACAGCGAAGTGATAGCATAAACTCTTACTTTGATGGGTATATTAATGCATCAACAACACTTCAGCATTTTGTTAAGCAGTATGAGAAGGCCCTAGAAAGTCGTCTTGAGAAAGAAGTTAAAGCTGATTATGACACAATAAACACCACTCCAGTTTTGAAGACACCATCACCTATGGAGAAACAAGCAGCTGGGATTTACACAAAGAGATTGTTTATCAAATTTCAAGAAGAGTTGGTTGAGACATTAACTTATTTGGCAAACAAAGTAGGTGAAGAAGAAATAACTTGTGTGTATAGAGTAGCCAAATATGGGGATATTCATAGGGCTTACTTTGTCAGATTTAACTCTTTTAAGATGAAGGTTACTTGTAGTTGCCAGATGTTTGAGTTTTTGGGTCTGGTTTGTAGACATATACTGACTGTTTTTAGGGTGACAAATATTCTTACTTTACCTTCTCATTATATTCTAAAAAGATGGACCAGGAATGCTAAAAGTGGTGTCATCTTGGATGAACACACCCCTGATTTGCTAAATGGTGCACGAGAATCTCTAACTATACGATATAATAATCTTCGTCATGAGGCCCTTAAGTATGTTGATGACGGAATAAGGTCTCCAAGAGTTTACGATGTTGCTATGAGTGCGCTACAGGAGGCTGCAAATAAAGTGGCACGAGCGACTAAGAATGATGGAAGACTGGTCGTTTCAAATGGAACTTATAAAGAAGATTTACAGTGGAACAATGAAGCTACTACAAGTTACAGGGATCCTGAAACCAGTTTGCAACAATCTTCATCCAAGGATGACCACGACAGAACAATTGAGAAATTGACAAGACAACTTGACCGAGCTCAAAGGAAGTGTGAAGTTTATAGGTCAAACTTGCTGTCAATTCTAAAAGACATGGAAGAGCAGAAGCTAGAATTATCAGTAAAAGTCCAAAATATCAAGTTAGGGATGAAAGATTGA 2370 0.3658 MEFESLSLANEVIEFDMIGLGDDGAIDIEHHVEDDDDYISVDNVFAATAATNIAATVGPQIPIGDTNLEPYQGMEFESEEAAKAFYNSYARRIGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRMEKEKNSLDGRVKRPRAETRVGCKAMLVVKIQVSGRWVVSSFVKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTLQGAGIGPSGIMSALIKEYGGISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAKNPLFFYAVQGDEDRYMSNIFWADPKARTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCALLINESEASFVWLFKMWLEAMSGQSPVSITTDHDRVIRVAINHVFPNTRHRFCKWHIFKECQEKLSHVLYEQVNFEADLHKCVNLPESIDEFESCWSSLIDSYNLREHEWLQAIYGDRRQWVPVYLRDTFFAEMSITQRSDSINSYFDGYINASTTLQHFVKQYEKALESRLEKEVKADYDTINTTPVLKTPSPMEKQAAGIYTKRLFIKFQEELVETLTYLANKVGEEEITCVYRVAKYGDIHRAYFVRFNSFKMKVTCSCQMFEFLGLVCRHILTVFRVTNILTLPSHYILKRWTRNAKSGVILDEHTPDLLNGARESLTIRYNNLRHEALKYVDDGIRSPRVYDVAMSALQEAANKVARATKNDGRLVVSNGTYKEDLQWNNEATTSYRDPETSLQQSSSKDDHDRTIEKLTRQLDRAQRKCEVYRSNLLSILKDMEEQKLELSVKVQNIKLGMKD 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00271 789 Coils Coil 734 761 - -
Aip05g00271 789 ProSiteProfiles Zinc finger SWIM-type profile. 577 613 IPR007527 GO:0008270
Aip05g00271 789 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 763 IPR031052 GO:0006355
Aip05g00271 789 SMART 26again6 588 615 IPR006564 GO:0008270
Aip05g00271 789 Pfam SWIM zinc finger 586 611 IPR007527 GO:0008270
Aip05g00271 789 MobiDBLite consensus disorder prediction 714 728 - -
Aip05g00271 789 Pfam FAR1 DNA-binding domain 85 176 IPR004330 -
Aip05g00271 789 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 43 763 - -
Aip05g00271 789 Pfam MULE transposase domain 297 389 IPR018289 -
Aip05g00271 789 MobiDBLite consensus disorder prediction 714 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00271 Aip-Chr5 3009915 3013709 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip05g00271 MULE 2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00271 - - gmx:100782414 1331.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00271 05 3009915 3013709 Aip05g00271 05 3009915 3013709 ECH