Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00269 ATGGAAGAAAACAAACACTTAGTTGATACCAATTTTCAAATTCAACCTAATGCTTCTTCTACTCCTGCTCCAGTAGAGGAAAGTCCAAATCACGTCAAAAACATATCGAAGGAGCCGCCTGTTGAGTCTAAGGCGGAGGCATCTGAGCCACCTGCTGAGTCTAAGGCAGAGCCACCTGCTGAGTCTACGGCTGATCCACCTGCTGAGGTTATGGCAGAGCTGCATCCTGTGACAAAGGCAGAACTACCTCCAGAGTTCAAGGCTGAGCAACCTCTTACAGTTGTGTCAGAGCCATCTGCTCAGGCTAAGTCAGAGTTACCTGCCCAGGCTACGGCAGTACCACCTGCGGAAGCTGAGGCAGATCCTCCTTCTGAGGATAAGTCTGAGCAACCTTCTGAGATTAAATCTGTGCTACCTGCTGAAGCTATGTCAGCACTAGATTCTGCGGACAAGGCTGAGCCACCACTTGAGGACAAAAGTGAGGATCAAGAGGTGGTTCCTGAGGGTATTCCACAGCAAGATATTCAAAGTAGTGACCCAATGGAGGAAGCTAATGAATTTCCTCAGAGCAATAATGGTACAGAGGATGATGTGAATGTTTGTACAAATAATGCCGATGTTGCTGAAACAATAGCAGAAGTGAAGTCTGAAGATGGTGAAGTGGCTAATGCCGATACAAACGTTGAAATCAAGAATATATTAGAAGTTGAGAATAAGACTGATGAAAATCAAGCTGCTGCAACTGCAGACAGTGGGAATGAAAACTCAAGTCACATGCTTTTCTTGGACGCTGACCATTGTTATGATGGGAATGAGTCAGGGACGGAGGAAGAACAATCAGCATTCATGAAAGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCCAAGTTTTATGGAGAAGGACTTAATTGCCTTAAGTTGTGGAGAGCTGTAACAAGATTGGGTGGTTATGACAAGGTAACCTCGTGTAAGCTATGGCGGCAAGTGGGAGAATCTTTCAAACCTCCTAAGACATGTACCACAGTTTCATGGACTTTCCGTGGGTTTTATGAGAAGGCACTTCTTGATTATGAAAGACATAAGATAAAAGGTGGTGAGCTGAGTGTTCCAATTCCTTCACAACCAGAGCCTATGAATATCGAAAATCAGACTTCAGCATCAGGTAGAGCACGTAGAGATGCTGCAGCACGCGCTATGCGGGGTTGGCACTCACAACGTCTACTAGGCAATGGTGAAGTTGGTGACCCCATTATTAAGGATAGGAATTCTGTGTCTATGCAAAAACGTGAAAAGGAGCAGCTTAAAAGCATCAATTTACTTAAACGCAAGAAACCATCGTATATGGACAATGCAGTCAAAGCTGCACGTAGTAAACCGTCTAAACCACAATTGGATACAGCTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAATCAATGTGCAAAAAACTAAGGATTGCTTTGAGGTATATGCTTTAGTTCCTGGTCTACTTCGAGAAGAGGTGCGTGTTCAATCAGACCCAGCAGGACGCTTAGTTATTAGTGGTGAGCCTGAGCATCTCAATAATCCTTGGGGTGTAACACCTTTCAAAAAGGTTGTAAGTTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCGGTGGTAACTCTGCATGGACAGTTGTTTGTTCGTGTCCCATTTGAGCAATCAGAATAG 1716 0.4435 MEENKHLVDTNFQIQPNASSTPAPVEESPNHVKNISKEPPVESKAEASEPPAESKAEPPAESTADPPAEVMAELHPVTKAELPPEFKAEQPLTVVSEPSAQAKSELPAQATAVPPAEAEADPPSEDKSEQPSEIKSVLPAEAMSALDSADKAEPPLEDKSEDQEVVPEGIPQQDIQSSDPMEEANEFPQSNNGTEDDVNVCTNNADVAETIAEVKSEDGEVANADTNVEIKNILEVENKTDENQAAATADSGNENSSHMLFLDADHCYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELSVPIPSQPEPMNIENQTSASGRARRDAAARAMRGWHSQRLLGNGEVGDPIIKDRNSVSMQKREKEQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVIDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00269 571 Pfam Hsp20/alpha crystallin family 488 570 IPR002068 -
Aip05g00269 571 CDD ARID 278 363 - -
Aip05g00269 571 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 95 570 IPR045147 GO:0006357
Aip05g00269 571 MobiDBLite consensus disorder prediction 31 51 - -
Aip05g00269 571 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 471 571 IPR002068 -
Aip05g00269 571 MobiDBLite consensus disorder prediction 8 27 - -
Aip05g00269 571 CDD ACD_sHsps_p23-like 490 566 - -
Aip05g00269 571 SMART bright_3 277 368 IPR001606 GO:0003677
Aip05g00269 571 Gene3D - 276 373 IPR036431 GO:0003677
Aip05g00269 571 ProSiteProfiles ARID domain profile. 276 367 IPR001606 GO:0003677
Aip05g00269 571 MobiDBLite consensus disorder prediction 151 165 - -
Aip05g00269 571 MobiDBLite consensus disorder prediction 373 392 - -
Aip05g00269 571 Gene3D - 470 571 IPR008978 -
Aip05g00269 571 SUPERFAMILY ARID-like 271 374 IPR036431 GO:0003677
Aip05g00269 571 SUPERFAMILY HSP20-like chaperones 480 567 IPR008978 -
Aip05g00269 571 Pfam ARID/BRIGHT DNA binding domain 279 363 IPR001606 GO:0003677
Aip05g00269 571 MobiDBLite consensus disorder prediction 1 199 - -
Aip05g00269 571 MobiDBLite consensus disorder prediction 170 199 - -
Aip05g00269 571 SMART ARID_2 273 363 - -
Aip05g00269 571 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 95 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00269 Aip-Chr5 2970159 2976224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00269 271 569 ARID Transcription Factor Family AT1G76510 64.145 1.92e-129 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip05g00269 HSP20 3.6e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00269 - - gmx:100791081 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00269 05 2970159 2976224 Aip05g00269 05 2970159 2976224 ECH