Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00259 ATGACACGTACTCTTAGATCCCTCACATCCACAGCCGACAACGCCACCGTCGTTGCCGCCGCTCCGCCGCCCGAGGCTGTGGCTCTTGAATCCGACTTCGTCGTCATCCTCGCAGCTCTCCTCTGCGCCCTCATATGCGTCGTCGGTCTTGTCGCCGTCGCCAGGTGCGCCTGGCTCCGCCGAGGCTCCGCCGCCGGAGCCTCACCGCGTCAGGCTCTCGCCAACAAAGGATTGAAGAAGAAGGTTCTCCAGTCGTTACCGAAATTCGCCTACGTTGACGGAGGAGATCCAGAATCCGGATTCGGTAGCGGTGCCGGGTGGATGGTGACGGCGGAGTGCGCGATCTGCCTTTCGGATTTTGCCGCCGGCGATGAGATCCGCGTGTTGCCGCAGTGTGGCCACGGGTTCCACGTGGCCTGCATAGACACGTGGCTTGGATCACACTCTTCTTGCCCTTCGTGCCGACAGGTTTTAGCGGTTGCGAGGTGCCAGAAGTGCGGGAGGTTTCCCGCCACCGGAGCTGGAAGCTCCGCCGCAAGAGCGGCGATCAATGAACCTGAGCTGAAGTCGAGAGAAGACGACAATGCCGTTTTTAACGATAACACTAATAACAGTAACAGTAATAGCGGCGGTTTCAGCTGTAATAGCAACAGTAGTAGTAGCAACACCAACAATAATAGTGGTTTCTTGCCTTGA 696 0.5805 MTRTLRSLTSTADNATVVAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGSAAGASPRQALANKGLKKKVLQSLPKFAYVDGGDPESGFGSGAGWMVTAECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQVLAVARCQKCGRFPATGAGSSAARAAINEPELKSREDDNAVFNDNTNNSNSNSGGFSCNSNSSSSNTNNNSGFLP 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00259 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 160 IPR013083 -
Aip05g00259 231 MobiDBLite consensus disorder prediction 189 231 - -
Aip05g00259 231 SMART ring_2 113 154 IPR001841 -
Aip05g00259 231 SUPERFAMILY RING/U-box 86 160 - -
Aip05g00259 231 CDD RING-H2_PA-TM-RING 112 155 - -
Aip05g00259 231 MobiDBLite consensus disorder prediction 197 231 - -
Aip05g00259 231 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Aip05g00259 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 178 - -
Aip05g00259 231 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 178 - -
Aip05g00259 231 Pfam Ring finger domain 112 155 IPR001841 -
Aip05g00259 231 SMART FANCL_C_2 109 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00259 Aip-Chr5 2819028 2820177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00259 1 193 C3H Transcription Factor Family AT1G76410 52.000 4.32e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00259 - - adu:107487390 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00259 05 2819028 2820177 Aip05g00259 05 2819028 2820177 ECH