Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00255 ATGAGGAGGGGTCCGATTCCTGATGATGATGATGATGATGCTGCTGTTCCgaggaaggggaaggttgtcacaaccaccggggggtggccggaactgctccgctgtgtcacgacaaaaccaccacctatccttctggacgagctcatagcggaaatcctgctgaggataccggcgagGGTAGTTGGAAACCACCTTTTGTTTGTTATTGGTCTAAGCTTTACTAATCCATCATATGCTGCTGCCTTAGAGCCAACAGTTCCAGTCTTTACATTTCTCTTTTCTCTAATCATGGGCATAGAAAAAGTGAACTTGCTAAGGTATGAAGGTGTGGCAAAGCTTCACACTTTTCTGCACCATTTTGTGGGCAATATATCCATTATCACTTTCTTGTCTGCTGAATCTACCAAGTACAAGGAAGCTTCTTCAAACATGCTTAAAGTTTGGTTATTGGTGTTCATTGTTCTCTCCAATGGGTTCTCATCAACTGGGCAAGACATGCACAATTCCACAGTACCTGATGTTGTAAATATTGGGGCTCTCTTCAATTACAATACCACTTTTGGTAGAACTGTAAAAATTGCGATAAGAGCAGCACTCGAAGAACTGAATGCTAATCCATCTATTCTTGGTAAAACACACTTGAATGTCATACTACAAGAAGATTCTAAATACAGAGGTTTTCTGAGCATTTCTGAGGTTTTGCAGGTTGCAACAAAGCATACTGTGGCAATAATTGGTCCCCAGTCTGCTGTAACAGCGCATGTCATATCTCATATTGCCAATGAGCTCCAAGTTCCGCTGCTATCATTTTCGGCTTTAGATCCCACCCTTTCTTCACTTCAGTTCCCATTCTTTATTAGAACTAGTCATAGTGACCTTTATGTGATGACTGCAATAGCAGACTTTGTTGACAACTATGGGTGGAAAGACGTTATTGCTTTGTACGTCGATGATGATAGTGGGAGGAATGGTATTGAAGCTTTAGGTGATAAGCTTGCGGAGAAACGTTGCCGGATCTCATATAAGGCACCTATGAGCCCTGAACCGACCGATGAAGAGATTACAAACGTGCTTGTTCAGGTGGCTTTGGCAGAATCACGGGTTATAGTTGTTCACGTCAACATTTTCTTGGGCAGCAAGGTCTTCGATATTGCAAAGAGTCTTGGGATGATGGGAAGTGGGTATGTCTGGCTAGCCACTACTTTCCTTTCTGGTATACTTGAAATGAATACTCCCTTCCCTGCAGGATTTACAAATAATATTCAAGGTGTTATTACATTTCGTGTATATACACCAGATTCTGAACTCAAAAGAAGGTTTGCTTCTAAATGGAAAAATTTGACTCAAGGGGAGACTGCTAATGGCCCCCTTGGATTAAGTGCTTTAGGTCTCTATGCATATGATACTGTTTATGCACTTGCACATGCACTAGATGCATTTTTCAAACAAGGGAACCGAATTACTTTCTCAAAGGATCCAAAATTATCATTACTTAATGGAGACAACTTGGGTCTTGATACACTGAACATCTTCAATGAAGGAAATCTTTTGCGTAGAAGCATATATGAAGTTAACATGACCGGTGTGACTGGTACATTCAGGTATACATCTGACAGAGACCTTGTAAATCCTTCATATGAAATCATAAATGTGGTTGGAACAGGGTTTAGGAGTATTGGTTATTGGTCCAATTACTCTGGATTATCAGTTGATCCTCCAGAAGCTCTTTCTTCCAAACCAGTCAAAAATTCCAGGGCTGGTAAAATGTTACATCCGGTGATTTGGCCTGGAGATACTACCAAAAAACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGTTATTGAAAATTGGAGTTCCAAAAAGCATTAGTTACCATGAATTTGTCTCACAAGTACCAGGCACCGATACATTTGAGGGATTCTGCATTGAGGTATTTCTTGCTGCAGTGAATTTGTTACCTTATGCTGTCCCCTATAAGTTTATCCCGTTTGGCGACGACCACAGCAATCCTAGTGCCACTGAACTTGTTCGTCTAATCACAACGGGTGAATTTGATGGTGCTGTTGGTGATATTACAATTACCACAGAAAGAACAAAGATGGTGGATTTTACACAACCTTATATTGAGTCTGGTCTAGTGGTGGTAGCACCAGTTAAGAAGACAGATTCGAATGCTTGGGCATTTTTGGCCCCATTTACGCCAATGATGTGGGCAGTCACAGCTATCTTTTTTCTATTTGTGGGAGCTGTTGTTTGGATATTGGAGCATAGAGTGAATGATGATTTTAGGGGCCCTCCCAAGCAACAAATAGTAACTACTTTATGGTTTAGTTTTTCAACCATGTTCTTTTCACACAAGGAAAATACAGTGAGCACGCTTGGTCGCTTTGTGCTGATTATATGGCTATTTGTAGTTCTTATAGTTAACTCGAGTTACACAGCTAGTCTGACCTCAATCCTCACTGTGCAACAACTTTCTTCACCAATCAAAGGAATTGAAAGTTTAGTGAATGGAAAGGATCCTATTGGCTACACACAAGGTTCTTTTGCAAAAAATTATTTAATTGAGGAAATTGGCATTAACGAATCCAGGCTTGTTGCTCTGAACACACCGGAGGAAGCTGCGAATGCACTAAAAAAGGGTCCCCATGATGGTGGTGTCTGTGCATATATTGATGAGCGTGCCTATATGGAGCTCTTCCTTTCAACCCGGTGCGATTTCACTGTTATAGGTCAAGAGTTCACCAGAGATGGTTGGGGATTTGCCTTTCCACGAGACTCTCCGTTAGCAATAGACCTGTCAACAGCAATTCTTGAAATGGCAGAGAGTGGAGACCTACAAAGGATCCACGACAAATGGCTTCTGCGCAGCGCTTGCTTATCACAAGGCACAAAGCTCGAAGTGGAAAGACTAAACCTTAAAAGCTTCTGGGGCCTCTATCTGATCTGTGGCTTTGCCTGCTTCCTTGCTCTCTTCATATATCTCATACAGATAGTTAGGCAGTACATCAAGCACTCCTCAGAGGAAGTTCACCCTGCTGATCAGAGCACGTCGTCATCAGGGTCCTCGCGCCTTCGAAGTTTCCTGTCATTTGTAGACGAAAAGGAAGAGACGGTTAAGCACCGTTCCAAGAGAAGGCAAACAGAGATGACCTCATGCCGAAGCAGCATAGTTGGATCATCCATTAGCTTTAGCTCCAACAAAGACTGTGCTCATTCATCTCCACACAAAAGTGATGGTGGTAGTGAAGCATAA 3258 0.4015 MRRGPIPDDDDDDAAVPRKGKVVTTTGGWPELLRCVTTKPPPILLDELIAEILLRIPARVVGNHLLFVIGLSFTNPSYAAALEPTVPVFTFLFSLIMGIEKVNLLRYEGVAKLHTFLHHFVGNISIITFLSAESTKYKEASSNMLKVWLLVFIVLSNGFSSTGQDMHNSTVPDVVNIGALFNYNTTFGRTVKIAIRAALEELNANPSILGKTHLNVILQEDSKYRGFLSISEVLQVATKHTVAIIGPQSAVTAHVISHIANELQVPLLSFSALDPTLSSLQFPFFIRTSHSDLYVMTAIADFVDNYGWKDVIALYVDDDSGRNGIEALGDKLAEKRCRISYKAPMSPEPTDEEITNVLVQVALAESRVIVVHVNIFLGSKVFDIAKSLGMMGSGYVWLATTFLSGILEMNTPFPAGFTNNIQGVITFRVYTPDSELKRRFASKWKNLTQGETANGPLGLSALGLYAYDTVYALAHALDAFFKQGNRITFSKDPKLSLLNGDNLGLDTLNIFNEGNLLRRSIYEVNMTGVTGTFRYTSDRDLVNPSYEIINVVGTGFRSIGYWSNYSGLSVDPPEALSSKPVKNSRAGKMLHPVIWPGDTTKKPRGWVFPNNGRLLKIGVPKSISYHEFVSQVPGTDTFEGFCIEVFLAAVNLLPYAVPYKFIPFGDDHSNPSATELVRLITTGEFDGAVGDITITTERTKMVDFTQPYIESGLVVVAPVKKTDSNAWAFLAPFTPMMWAVTAIFFLFVGAVVWILEHRVNDDFRGPPKQQIVTTLWFSFSTMFFSHKENTVSTLGRFVLIIWLFVVLIVNSSYTASLTSILTVQQLSSPIKGIESLVNGKDPIGYTQGSFAKNYLIEEIGINESRLVALNTPEEAANALKKGPHDGGVCAYIDERAYMELFLSTRCDFTVIGQEFTRDGWGFAFPRDSPLAIDLSTAILEMAESGDLQRIHDKWLLRSACLSQGTKLEVERLNLKSFWGLYLICGFACFLALFIYLIQIVRQYIKHSSEEVHPADQSTSSSGSSRLRSFLSFVDEKEETVKHRSKRRQTEMTSCRSSIVGSSISFSSNKDCAHSSPHKSDGGSEA 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00255 1085 Pfam Bacterial extracellular solute-binding proteins, family 3 635 955 IPR001638 -
Aip05g00255 1085 Gene3D - 726 853 - -
Aip05g00255 1085 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 150 1073 - -
Aip05g00255 1085 CDD GluR_Plant 615 955 - -
Aip05g00255 1085 Pfam Ligand-gated ion channel 956 988 IPR001320 GO:0015276|GO:0016020
Aip05g00255 1085 Pfam Receptor family ligand binding region 192 553 IPR001828 -
Aip05g00255 1085 CDD PBP1_GABAb_receptor_plant 176 572 IPR044440 -
Aip05g00255 1085 PANTHER GLUTAMATE RECEPTOR 150 1073 - -
Aip05g00255 1085 PIRSF IGluLR_plant 140 1078 IPR017103 -
Aip05g00255 1085 SUPERFAMILY Periplasmic binding protein-like I 170 607 IPR028082 -
Aip05g00255 1085 Gene3D - 193 543 - -
Aip05g00255 1085 SUPERFAMILY Periplasmic binding protein-like II 590 957 - -
Aip05g00255 1085 Gene3D - 291 568 - -
Aip05g00255 1085 Gene3D - 900 962 - -
Aip05g00255 1085 MobiDBLite consensus disorder prediction 1061 1085 - -
Aip05g00255 1085 Gene3D - 611 725 - -
Aip05g00255 1085 SMART GluR_14 616 957 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00255 Aip-Chr5 2761309 2770287 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00255 148 1057 Ion Channels AT3G51480 57.409 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00255 K05387 - gmx:100793320 1397.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00255 05 2761309 2770287 Aip05g00255 05 2761309 2770287 ECH
Aip10g00071 10 653894 656263 Aip05g00255 05 2761309 2770287 ECH