Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00223 ATGGGGTCTAGTGGCAGTAAAGCCAATTCTTCTGCTTGCAGTTCATCGTCTTCTTCTTCGGGTAGTTTCAGGAAAGGTCGATCTAAGAGGCATAGAGGCTTCCCATCTTATTGTTTGGGAACAACTTCTGGATCTCATGACAGTGATCATGAAGACCAGGTTTGTGATCAGAACAAAGTAAATGGAAGTGGAGTTGAAATAGTTGCGGATGAAGTGAAATCAAAATCCTTTAGAAAAGCCAAGTATGATGATGAAATGCCTCCTAACATCGACCTTGACGAGTGGGATCACACAGCATCCAGAACCGGTAGCAGCTCTAATCATGCTTCTTCAACTCAGTCTTTGAATCCTTCAAGTAGATTCCTTTCTCGCTTTAGCTTCATTCCTGGTAACATAAGCTTCAGACTTAGCAGAACCACCAGTCTTGGTTCATCAAGGCCTTGTCCTGTTTCTTCTGGAAGTCTCACCATATTTAACAGTGAAGATGAGCTTAATCCTCATCCAAGCCACCCTGGAAGCTTGATTAATAGAAATGAAACTCAACAACGTAGAGAATTGCTTAATGCATCTTTTGATGATCGAGTGCCTATTCAGTATCATGGAGGTGCTTCTACCGATTTTAGATCTAATGCACCAGCATTGGATTCCTTTGGCAGCTTAGCAAGAAGTCCCACAATTTCTCCTGTCGCGGACGTGATTAGAGATGGGGAAGGTACAAGAGAAGTGGTGGATATGAACTTGTTTTCTCCAAGAATTCATACAGAGGCAGAAAATGTTGAGACAAGACATACTGATAGACGAAATGGGGCTCGAGAACCTGTCGATCGAAATGTACGCTTCAGCCGAACTTTAAGTGTTGGAAGACTTAGAGATAGAGTACTCCGACGATCAACATTATCTGAGTTCACGTTTGGCCCTCTGCAACAGGAGAGGGAAGCAAGAGATGCTAGTTGGGACAGAGGAAGAGAAGTGGGGGGGAGAGATACGAGAGTGCCACGGACTAGTCAAAATGCTGTGAATTCTCCAACTACAATTTCTAGCTCCTCATTTAGTGTTCATGACTTTGATGTTGAGACTTCACGATCTAGAGAAACAAGGTATCAAGATCTGCTGGAACACAGGTCTAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGAAGCCGGTTTGAAAATCTGTCTGGACATGACAGATCATGCGTCTTGTCTGGTCAGCACAGAAATGGTCGTTGTACATGCCGAAACGGTAGCCGTGATACGAATTCAACTGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTGATGCTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCGGTTGTTCTATCTTCCCGCCCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCTAATGAAGTCGTGGAATCTTTGCCTGTGAAATTATACACAAAGTGCCACAAACATCAAGAAGATGCTGTGCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAGCATGCGAGTACTTCCTTGTCACCATGAATTCCATAAAACTTGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCACTATGTAGAGGGGACATTTGTGTATCAGATACACTGCCAATGGAGAACTAA 1680 0.4363 MGSSGSKANSSACSSSSSSSGSFRKGRSKRHRGFPSYCLGTTSGSHDSDHEDQVCDQNKVNGSGVEIVADEVKSKSFRKAKYDDEMPPNIDLDEWDHTASRTGSSSNHASSTQSLNPSSRFLSRFSFIPGNISFRLSRTTSLGSSRPCPVSSGSLTIFNSEDELNPHPSHPGSLINRNETQQRRELLNASFDDRVPIQYHGGASTDFRSNAPALDSFGSLARSPTISPVADVIRDGEGTREVVDMNLFSPRIHTEAENVETRHTDRRNGAREPVDRNVRFSRTLSVGRLRDRVLRRSTLSEFTFGPLQQEREARDASWDRGREVGGRDTRVPRTSQNAVNSPTTISSSSFSVHDFDVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCVLSGQHRNGRCTCRNGSRDTNSTDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKCHKHQEDAVQCYICLVEYEDGDSMRVLPCHHEFHKTCIDKWLKEIHRVCPLCRGDICVSDTLPMEN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00223 559 SMART ring_2 504 545 IPR001841 -
Aip05g00223 559 MobiDBLite consensus disorder prediction 330 349 - -
Aip05g00223 559 Pfam Ring finger domain 503 546 IPR001841 -
Aip05g00223 559 MobiDBLite consensus disorder prediction 310 349 - -
Aip05g00223 559 MobiDBLite consensus disorder prediction 99 117 - -
Aip05g00223 559 MobiDBLite consensus disorder prediction 312 329 - -
Aip05g00223 559 MobiDBLite consensus disorder prediction 1 23 - -
Aip05g00223 559 MobiDBLite consensus disorder prediction 79 117 - -
Aip05g00223 559 ProSiteProfiles Zinc finger RING-type profile. 504 546 IPR001841 -
Aip05g00223 559 SUPERFAMILY RING/U-box 483 552 - -
Aip05g00223 559 MobiDBLite consensus disorder prediction 1 58 - -
Aip05g00223 559 MobiDBLite consensus disorder prediction 79 98 - -
Aip05g00223 559 CDD RING-H2_PA-TM-RING 503 546 - -
Aip05g00223 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 551 IPR013083 -
Aip05g00223 559 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 559 - -
Aip05g00223 559 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00223 Aip-Chr5 2371500 2376182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00223 223 553 C3H Transcription Factor Family AT5G45290 62.242 2.03e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00223 - - gmx:100815830 801.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00223 05 2371500 2376182 Aip05g00223 05 2371500 2376182 ECH