Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00208 ATGACGCGAGGGAAGCAGAAGATCGAAGCACAGAAGCGTAACGCCGAGAAGAATCAGAAGGCTAAGGGTTCTCAGCTTGAGGCCAGAGCCGTTGGCCTCAAAGTTGTTTGCCCCATCTGCAAGACTCAGCTTGCAAATCAAAACCAGCTTGTTGATCATTATGGCTCCAAACACCCAAAGGAGAAACCTCCCGAGTCAAGCTAA 204 0.5 MTRGKQKIEAQKRNAEKNQKAKGSQLEARAVGLKVVCPICKTQLANQNQLVDHYGSKHPKEKPPESS 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00208 67 PANTHER GEO09665P1-RELATED 1 65 - -
Aip05g00208 67 MobiDBLite consensus disorder prediction 1 25 - -
Aip05g00208 67 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Aip05g00208 67 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 63 IPR013087 -
Aip05g00208 67 SUPERFAMILY Expressed protein At2g23090/F21P24.15 1 65 - -
Aip05g00208 67 Pfam 4F5 protein related disordered region 1 28 IPR007513 -
Aip05g00208 67 PANTHER GEO09665P1-RELATED 1 65 IPR045230 -
Aip05g00208 67 MobiDBLite consensus disorder prediction 1 23 - -
Aip05g00208 67 Pfam Zinc-finger of C2H2 type 37 57 - -
Aip05g00208 67 Gene3D - 1 66 IPR026939 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g00208 4F5 0.00012 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00208 - - sind:105158818 129.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00208 05 2235965 2238555 Aip05g00208 05 2235965 2238555 ECH