Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00207 ATGTTCGGTGGCGAGGACGCCCGAGCGGCTCGCCTGGCCATGGTGGCGCCGCCGCAGCCGCAGATGTTGAACCCGGCGACATCGTCGGTGATTTCCGGCGAGATATCGCCGACGACGGCAGGGAGAGAGGAGAGGGTTCCGGCACAGCCGCAGTGGAGCCAGCAGGAGACGAGAGAGTTCATAGCGATACGCGCGGAGCTTGAGAGGGACTTCACTGCATCGAAGCGGAACAAGACGCTTTGGGAGGTTGTGAGCTCCAAGATGAGGGAGAGAGGCTTCAGGAGGAGCCCCGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGATCCAGAGCATAGTAGGCAATGTCCATTTTTCGAAGAATTGCATGCAGTATTTACTGAAAGAGCACGTAATATGCAACGACTGCATCTAGAATCTGAGGCTCGTTCAGCTCAAACAAAGAAAGGGGTGAAAAGGTCAAGTGGAGAACGGTCCTCAGAAGAGTACTCTGAAGATGACGAGGAGGTAGAAGATGACAGTGAAGAGGAGAAGCCTTCTAGAAGCAATGCTCGTAAAAGGAAAGTTGACAAAACTGATAAGTCTTCAAAGGCAAACAATCCATCAAATACTTTCAAGCGGCTTCAGTTAGCCTGCACTGGTACAAGCTGA 678 0.5177 MFGGEDARAARLAMVAPPQPQMLNPATSSVISGEISPTTAGREERVPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHSRQCPFFEELHAVFTERARNMQRLHLESEARSAQTKKGVKRSSGERSSEEYSEDDEEVEDDSEEEKPSRSNARKRKVDKTDKSSKANNPSNTFKRLQLACTGTS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00207 225 PANTHER - 41 206 - -
Aip05g00207 225 SMART sant 48 110 IPR001005 -
Aip05g00207 225 ProSiteProfiles Myb-like domain profile. 52 108 IPR001005 -
Aip05g00207 225 MobiDBLite consensus disorder prediction 21 36 - -
Aip05g00207 225 MobiDBLite consensus disorder prediction 14 54 - -
Aip05g00207 225 MobiDBLite consensus disorder prediction 205 225 - -
Aip05g00207 225 Pfam Myb/SANT-like DNA-binding domain 50 133 IPR044822 -
Aip05g00207 225 PANTHER - 41 206 - -
Aip05g00207 225 Gene3D - 52 113 - -
Aip05g00207 225 CDD GT1 50 115 - -
Aip05g00207 225 MobiDBLite consensus disorder prediction 147 225 - -
Aip05g00207 225 MobiDBLite consensus disorder prediction 170 184 - -
Aip05g00207 225 MobiDBLite consensus disorder prediction 147 169 - -
Aip05g00207 225 MobiDBLite consensus disorder prediction 185 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00207 Aip-Chr5 2232694 2236180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00207 50 197 Trihelix Transcription Factor Family AT2G38250 44.304 6.07e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip05g00207 Myb_DNA-bind_4 2.9e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00207 - - adu:107486987 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00207 05 2232694 2236180 Aip05g00207 05 2232694 2236180 ECH