Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00195 ATGGATAACGATGGTGGTGGTGGCCAAGGTAATCCATTATCTAACAACATTGTTGTGTTACTTCTTGCAATGGGTTCAGCTGCTTTTGTTGTCTCAATTTACCATCTCATAGCAATTTGTTTTTGCAATAACCGGCAAAATTCAAATAATAATGAGCAAAATCTACATCAACAAGATGGTGGTGAACCAAGCACTTCTACTTCTGTGGCGCATTTGATTCCGTCGCATAAGTATCACAAGAAAAAGGTTAATGAGAACGGCGAAGAGGCTGATGATTGTGGCGGCAGTGGCGGCACTTGTGCCGTGTGTTTGGGAGATTTTGAAGAGGGTGAGGAGTTGAAGACTTTGCCGGAGTGCATGCACTCTTTTCACGTGCCATGCATTGATATGTGGCTCTATTCTCATACAAGTTGTCCCGTTTGCCGCGCCAGCGCCACGCCGTCGCCGGTGGGGCTCAACCATGGCCCTTTAAATGTTTTTGGTGATCATAGTGGTTATGGCTTGAATAATAATAATAATAATGCACGCCAAGGGATTGATATGGTGCAAATTGCTGTTGTCCAAAGTGGTTTTGTTCGAAGGTAA 585 0.441 MDNDGGGGQGNPLSNNIVVLLLAMGSAAFVVSIYHLIAICFCNNRQNSNNNEQNLHQQDGGEPSTSTSVAHLIPSHKYHKKKVNENGEEADDCGGSGGTCAVCLGDFEEGEELKTLPECMHSFHVPCIDMWLYSHTSCPVCRASATPSPVGLNHGPLNVFGDHSGYGLNNNNNNARQGIDMVQIAVVQSGFVRR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00195 194 SMART ring_2 100 141 IPR001841 -
Aip05g00195 194 SUPERFAMILY RING/U-box 99 148 - -
Aip05g00195 194 Pfam Ring finger domain 99 142 IPR001841 -
Aip05g00195 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 147 IPR013083 -
Aip05g00195 194 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Aip05g00195 194 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 10 193 - -
Aip05g00195 194 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 193 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00195 Aip-Chr5 2094775 2095359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00195 18 191 C3H Transcription Factor Family AT5G17600 32.418 8.15e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00195 - - aip:107639941 392.504