Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00190 ATGCTTGTCAAGCCTCCTCCTTCCATGCTCGTGGGTCGGTTTAAAGCCTTACTTTCACAGCGCCAAGGCTACCCCAAGTCTTTCCCTGCCGAAGAAATTGTTCGAACCTATGGGCTATTGTTGTCAGAACTCACCTCCAATGTGAATCCCATCATTACCGATCTCACTATCATTGCCGGCCAGCAGAGGAAACACGCCAAGGGCATCGCCGATGCCATTTGCAACCGGATTCTTGAGGTGCCTGCTGATAAAAAACTTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTTCAGCCCAATCTGCATTCTATTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTCCCTCCCTCTGTTCTAAGCAATATTGAAGCTCAATTGCAGTCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGAATATGATTTTCGTGGACCGATTCTTGGGGCACATGTCATTAAACCACAATCCTTGCAGCAGATGGAACACTCTAGTTCAATTATGAATAATGTTGGTGGTGATAGGTTGGATTCAACGGGAACTGTAGGTAATACAAGAGAAGGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATAGTTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTCACAAAAGCCGTGAAATTCCTAGTACTAAGCTTTTGTTGGTGGAGCAGCTTGGAAGAAATGGTTTAGGGAGCAAGTTTCCACTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATGTGAATCCAGGATTAGTAGACTGTAGTAGAAACAACAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGAAAGTTATCTAATGATCTATCTAATTTTTCACAGTACCCCTTTAATATGGGGGCTACTCATCCTTCCGGCTTGAATCTAGCATTTCCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAGTAAACGTTAATAATAACACCAATGTAGGTCATGGCCCAAATAAAACTCAGTTTATACATGACCAATTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAATTCATGGACAAACACCTCAACTACAGTTTTTTCCACCTCAAATTTCATCTTCAACACAAATTAGTCATGGGAGCTCTTTGCAAGGACATGGTGCCTCAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCAGGACCAAAGTCTACAGTTACATGGGGGAACCTTGCCACCTTTATGTCCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCGATGCTTCAGTGACAAGTCAACCACCACCTGCATATCTTGATTTGATTAGTTCACTAGTGAACCACGGTGTGATCTCGGTAACTAATCCACCCACCAATCCACCCACTGGACTGGATTCCATTGGGACGGAGTTCCATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTTCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAACGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCAAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGCCACGAAATGGACGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAACAACACTGGCCACCATGGACAGACATCAATTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTTTGACTCTACTATGCCCTCAACCAACAGGGAATCTACCAAGAGAGTAGTAAGAGAAAAAGAATGCGGGTCGACCAAATATCAGTTTTGTGCACCCTTGATTAGGACTTACTAA 2007 0.437 MLVKPPPSMLVGRFKALLSQRQGYPKSFPAEEIVRTYGLLLSELTSNVNPIITDLTIIAGQQRKHAKGIADAICNRILEVPADKKLPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSILQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGEYDFRGPILGAHVIKPQSLQQMEHSSSIMNNVGGDRLDSTGTVGNTREGGLNEWQQKRFSSDSWNIFQTSKTYNLNDEQQRQSPRALIEAYGCHKSREIPSTKLLLVEQLGRNGLGSKFPLASWQDTEEEEFDWKDVNPGLVDCSRNNSSMQSSVRFSRKRKLSNDLSNFSQYPFNMGATHPSGLNLAFPLQKRPRSLFEPVNVNNNTNVGHGPNKTQFIHDQLPNQPGPISSNLQIHGQTPQLQFFPPQISSSTQISHGSSLQGHGASISTPISNPLPDMQDQSLQLHGGTLPPLCPSLPTAPSQMMSHPHADASVTSQPPPAYLDLISSLVNHGVISVTNPPTNPPTGLDSIGTEFHPDILKVRHEGVISALYGDLSRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKCHEMDEWMYRGATYLKAPMGTTLATMDRHQLGPIVHSKCRSDFDSTMPSTNRESTKRVVREKECGSTKYQFCAPLIRTY 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00190 668 Gene3D - 26 156 IPR008942 -
Aip05g00190 668 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 8 589 - -
Aip05g00190 668 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 592 631 - -
Aip05g00190 668 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 8 589 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip05g00190 668 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 592 631 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aip05g00190 668 CDD CID_Pcf11 34 155 - -
Aip05g00190 668 SMART 558neu5 32 154 IPR006569 -
Aip05g00190 668 ProSitePatterns Zinc finger C2H2 type domain signature. 552 572 IPR013087 -
Aip05g00190 668 ProSiteProfiles CID domain profile. 29 157 IPR006569 -
Aip05g00190 668 MobiDBLite consensus disorder prediction 421 453 - -
Aip05g00190 668 Pfam CID domain 48 147 IPR006569 -
Aip05g00190 668 SUPERFAMILY ENTH/VHS domain 31 155 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00190 Aip-Chr5 2053055 2056995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00190 592 629 C2H2 Transcription Factor Family AT4G04885 60.526 2.64e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g00190 CID 4.4e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00190 K14400 - aip:107640327 568.926