Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00182 ATGGAGGTGAAACTCACCGAATCGGCGATTACTAAGATGTGCGAGAATTCCAGTTCGGCTGAGGATCTGAAGCCGATTTTGCAAGTAATGGACTTCAAACTTGTGCAGTCGCAACAGAACAATACCGAGAGGTTCCGTTTGGTTCTCTCTGATGGCTCCCATTACCAGCAAAGCATGCTCGCTACGCAGAAGAACGATTTGATCCATTCTGGCAAGTTGCAGAGAGGTTCTATCATCGTTCTCAATCAGTACACATGCAGCCTTGTCCAAGGCCGATCGATCATTATTATCATTGAGCTAGATATTCTGTTGGACAAATGCGAGCTACTTGGAAAACCGGTCAGTGCAACAAAATTTGCTTCGTCACAATCTGCAACTGATCAATCAGGAATTACCTCTGGGAATAATGTGCCTGGTCCTTCTCCGGAACCCCCAAAAGTAAATCAACCTGCTAGTAGTGTTGGCTCTTCTAGTTTTGACATGGGGAGATTTGGTGCATCAAATGCCCCTCCTGCTTATCCAAAAGCAGAGCCTAGAGCTATGGGACCTAGTTCTGGCGTTGCAGGTTATAGTTCAACAAATGTTCCTTTTACTTATCCTAAACCAGAGTCTGGAGCTACATTACCTAGATCAGGACAGTCTGGTGGGTCTTATGGTGATCAGAATGTGGGTTATCGCAATCCCCAATCTGAGGCATCAAGGCCCTTTCAAAATTCTTATGCTCGTCCACCTCAGCCCATGTATCGACAGCCATCTCCAGTGTACAATAACAGAGGCCCTGCGGCAAGAAATGAAGCTCACCCTAGGATCATTCCAATAGCCGCATTGAATCCATACCAGAGTAACTGGACAATTAAAGCTAGAGTAACAGCTAAGGGAGAACTCAGGCACTATAGTAATGCCCGAGGTGATGGAAAAGTGTTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATCCGGGCAACTTGCTTTAATACTGTGGCTGATCAGTTTTACAATGTAATTGAAGCTGGAAATATCTATCTGCTTTCCAGGGGACATATAAAGCCAGCACAAAAGAACTTCAATCACCTTCGTAATGATCAAGAACTGACCCTTGATATAGGCACCATTATACAACCGTGCCATGATGATGTGTCAATTCCACAGCAGACTTTTAACTTCCGTCCAATTATTGAAGTTGAAACTATTGAAAACAATACTATTTTGGATGTGATTGGTGTGGTGTCTTCTATTAGTCCTACTGCTTCAATTATGAGGAAAAATGGCACTGAAACTCAAAAGAGAACCCTCCAGTTGAAAGACATGTCTGGTCGGAGTGTTGAATTAACCATGTGGGGAAATTTTTGCAATGCAGAAGGACAAAGGCTACAAAGTCTCTGTGATGCTGGAAGATTTCCAGTTTTGGCTGCCAAAGCCGTCAGAGTAAGTGATTTCAACGGGAAGTCAGTTGGGACCATAGCCACTAGCCAGCTATTTGTAGAGCCTGATTTTGTGGATGCTTGTAGGCTGAGGGAATGGTTTGACAAGGAGGGGAGGAACGTTCCTACTATTTCTCTTTCCAGAGAAGCATCTAATTTTGGCAAGTCTGATGTGCGGAAGACCGTATCCCAGATTAAAGATGAGAAATTAGGGACATCTGAGAAGCCTGATTGGATATCTGTTTGTGCAAGTATTTCATACATGAAGGTTGATAACTTCTGCTACACAGCTTGCCCTGTCCTGATAGGTGACAGGCAATGCAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGATGTGAAAGGTGTGATCAGACTGTTGATGCTTGTGATTATAGGTACATTCTGCAATTCCAGATTCAGGATCACACTGGCTTGACATGGGTTACTGCTTTCCAGGAGAGTGGCGAGGAGATCATGGGTACGTCTGCTAAAGAATTGTATAACCTTAAATTCGAACAAATGGATGATGAAAAATTTGCAGAAATCATGCGTAAGGTTCTCTTTGGTAAGTATATGTTCAAGTTGAAAGTAAAGGAGGAAACGTACAGTGATGAGCAGCGTGTCAAGTCGACGGTAGTAAAGGCAGAGAAGGTAAGCTTTCCATCTGAATCTAAATTTCTTCTGGATATGATTGATAAGCTTAAGTCTGAGAATGGAGAAGGTACCAATCCTAGCTCCATAGCTAATACTGCCGGACTAGTCAGCACTGGAACTGGACAATCTATGCCACCACCGGTTTACAATTCTGTGATGAGCAACAGTAGTGCCGGTATTGATTATAGAACCCAATATAGCAACTCTTTTGCAACTTCAACTGGTGCTCCTGCTCCTGCTTCATATGTGTCATGTAGCATATGTGGTTGCTCTGGTCACAGCTCTGCACAATGCCCTAACAATATGATGAATATGCCTGCTCAGCCGGCAGCAAGAGGCGGTGGATTCACAAGCAGGGCATCTGCCGGATCAGGAGGAGCCTCCGGCGAATGCTTTAAATGCCATCAACCTGGCCATTGGGCAAAAGATTGCCCTGCTTACAGTGCAGCACCACCAGCTTATGGAAGCGCTAACGGAATGCAAGCACCAGAATCAAGTATACCTGAACCGTATCAAACCAAAAGTGGGAACCGGTTAGGTGGATCAGGGAACCACAAAAACGAAACAGTACTTAGAAGTAAAGGCACGTGCCATTTACCGGCTAAGCAGTTCTCTCCACAAGAGGAAGTTTTTTCAACAAAAGAAGCAATGGACTTTTTTCTAAACGGAATGAATGGGATTGGTGATGAATCTGAGTGCCCTTTTGATGCAATGGACATGCAAAGGTGCCCATTCTTGAGGAACATCAACAAACCTACAAACTTCTCCTTCTCTTCAGCTTATATGTCTGTTCCTGTCCATGGAAGAAAAGGTCCTATATTTGAAGATGGTCCTAGTTTTGACATGGCATTTAAGCTCTTCCATGGGAAAGATGGAGTTGTTCCCCTCTTTGAGAGATCTGACTTTAACAATGGCTGTAGGGAAGCTGATTCTATGCCTGTTTTTAACCCGTTAGCAGGAAGAGCTGCTACCATAAGTCTGTCAGCATTTGGACCTGGTGGCCTATTTAATTTTGGGAATCTTTCTGAGAAATGGAAGAAGCAGAAGTCGGAATCATCAAAGAAAAAGGAACACTCGTCCCTGGAAGGGGATGCATCAAAGCATGAAGCGCTTGGAAATGAATGGCTAGCAAATGGAAATTGCCCTATAGCCAAGTCTTATAGAGCTGTAAGCAATGTTCTCCCACTTGTTGCTACGGCTTTTCGGCCACCACCTGGAATAAAGATTAGATGCCCACCTGCTGTTGTTGCTGCAAGAGCTGCTCTTGCTCGTACAGCATTTGTGAAAAACCTGCGCCCACAGCCCCTTCCTGCGAAAATGCTTTGTATTGCAGCAATGGGCATGGCACTTAATGTGCCCCTGGGCATGTGGAAGGAACACACCAAGAAATTCTCGCTGTCTTGGTTTGCAGCCGTGCATGCTGCTGTTCCCTTTATAGCCATGCTTCGGAAGTCGGTAGTGATGCCTAAATCAGCAATGGCATTGACCATTGCAGCTTCTATCCTCGGCCAGGTCATTGGCTCAAGAGCTGAGCGTATCCGGCTGAAAGCAGCAGCAGTAGCTGAGACCGGAAAAGTGGCAGCAGAGACTGCAAGCAGCGTGGCCAACTATAATCCCATGCAGATTGGTGATATTAGGGTTGGTTGCTGTGGTCCGGAGGGGATGGTTCTGAAGACGCTTCCCGCATTCTGCTGCAACCGGGCTTTCGCTTTTGTTAACGACTTCAACAGAGCAGTTACGTTCTATTATGATAGGATTCTGATTGACTTCACTTCGTTGAGGATTGGTTCATTCCGAGACACCAATAGCAATGAAAGTGGTGATAGGAATAGAGGATATGTTAGGAGTAGTGACGATGAGAATGAGAATGAGAATGGAGTGAGAAAAGATAGTGACTTAGAGTTTTAA 3993 0.4465 MEVKLTESAITKMCENSSSAEDLKPILQVMDFKLVQSQQNNTERFRLVLSDGSHYQQSMLATQKNDLIHSGKLQRGSIIVLNQYTCSLVQGRSIIIIIELDILLDKCELLGKPVSATKFASSQSATDQSGITSGNNVPGPSPEPPKVNQPASSVGSSSFDMGRFGASNAPPAYPKAEPRAMGPSSGVAGYSSTNVPFTYPKPESGATLPRSGQSGGSYGDQNVGYRNPQSEASRPFQNSYARPPQPMYRQPSPVYNNRGPAARNEAHPRIIPIAALNPYQSNWTIKARVTAKGELRHYSNARGDGKVFSFDLLDSDGGEIRATCFNTVADQFYNVIEAGNIYLLSRGHIKPAQKNFNHLRNDQELTLDIGTIIQPCHDDVSIPQQTFNFRPIIEVETIENNTILDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTMWGNFCNAEGQRLQSLCDAGRFPVLAAKAVRVSDFNGKSVGTIATSQLFVEPDFVDACRLREWFDKEGRNVPTISLSREASNFGKSDVRKTVSQIKDEKLGTSEKPDWISVCASISYMKVDNFCYTACPVLIGDRQCNKKVTNNGDGKWRCERCDQTVDACDYRYILQFQIQDHTGLTWVTAFQESGEEIMGTSAKELYNLKFEQMDDEKFAEIMRKVLFGKYMFKLKVKEETYSDEQRVKSTVVKAEKVSFPSESKFLLDMIDKLKSENGEGTNPSSIANTAGLVSTGTGQSMPPPVYNSVMSNSSAGIDYRTQYSNSFATSTGAPAPASYVSCSICGCSGHSSAQCPNNMMNMPAQPAARGGGFTSRASAGSGGASGECFKCHQPGHWAKDCPAYSAAPPAYGSANGMQAPESSIPEPYQTKSGNRLGGSGNHKNETVLRSKGTCHLPAKQFSPQEEVFSTKEAMDFFLNGMNGIGDESECPFDAMDMQRCPFLRNINKPTNFSFSSAYMSVPVHGRKGPIFEDGPSFDMAFKLFHGKDGVVPLFERSDFNNGCREADSMPVFNPLAGRAATISLSAFGPGGLFNFGNLSEKWKKQKSESSKKKEHSSLEGDASKHEALGNEWLANGNCPIAKSYRAVSNVLPLVATAFRPPPGIKIRCPPAVVAARAALARTAFVKNLRPQPLPAKMLCIAAMGMALNVPLGMWKEHTKKFSLSWFAAVHAAVPFIAMLRKSVVMPKSAMALTIAASILGQVIGSRAERIRLKAAAVAETGKVAAETASSVANYNPMQIGDIRVGCCGPEGMVLKTLPAFCCNRAFAFVNDFNRAVTFYYDRILIDFTSLRIGSFRDTNSNESGDRNRGYVRSSDDENENENGVRKDSDLEF 1330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00182 1330 MobiDBLite consensus disorder prediction 1296 1330 - -
Aip05g00182 1330 Pfam Replication protein A OB domain 392 495 IPR031657 -
Aip05g00182 1330 MobiDBLite consensus disorder prediction 715 736 - -
Aip05g00182 1330 MobiDBLite consensus disorder prediction 186 200 - -
Aip05g00182 1330 CDD RPA1N 9 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aip05g00182 1330 Gene3D - 269 379 IPR012340 -
Aip05g00182 1330 SUPERFAMILY Retrovirus zinc finger-like domains 808 844 IPR036875 GO:0003676|GO:0008270
Aip05g00182 1330 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 244 710 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip05g00182 1330 Gene3D - 3 117 IPR012340 -
Aip05g00182 1330 Gene3D - 380 519 IPR012340 -
Aip05g00182 1330 MobiDBLite consensus disorder prediction 1306 1330 - -
Aip05g00182 1330 MobiDBLite consensus disorder prediction 148 163 - -
Aip05g00182 1330 Pfam Zinc knuckle 825 840 IPR001878 GO:0003676|GO:0008270
Aip05g00182 1330 SUPERFAMILY Nucleic acid-binding proteins 387 516 IPR012340 -
Aip05g00182 1330 CDD RPA1_DBD_C 537 710 IPR013955 -
Aip05g00182 1330 Pfam Replication factor-A C terminal domain 553 704 IPR013955 -
Aip05g00182 1330 PANTHER REPLICATION PROTEIN A SUBUNIT 3 750 - -
Aip05g00182 1330 MobiDBLite consensus disorder prediction 121 137 - -
Aip05g00182 1330 CDD RPA1_DBD_A 272 375 - -
Aip05g00182 1330 PANTHER REPLICATION FACTOR A 1, RFA1 3 750 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip05g00182 1330 Gene3D - 520 711 IPR012340 -
Aip05g00182 1330 CDD RPA1_DBD_B 403 510 - -
Aip05g00182 1330 Pfam OB-fold nucleic acid binding domain 283 365 IPR004365 GO:0003676
Aip05g00182 1330 SUPERFAMILY Nucleic acid-binding proteins 269 381 IPR012340 -
Aip05g00182 1330 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aip05g00182 1330 MobiDBLite consensus disorder prediction 121 249 - -
Aip05g00182 1330 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Aip05g00182 1330 SMART c2hcfinal6 825 841 IPR001878 GO:0003676|GO:0008270
Aip05g00182 1330 MobiDBLite consensus disorder prediction 207 245 - -
Aip05g00182 1330 Gene3D - 777 846 - -
Aip05g00182 1330 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Aip05g00182 1330 SUPERFAMILY Nucleic acid-binding proteins 534 711 IPR012340 -
Aip05g00182 1330 ProSiteProfiles Zinc finger CCHC-type profile. 826 840 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00182 Aip-Chr5 1990383 1998974 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00182 1 819 Core DNA Replication Machinery Family AT5G45400 49.829 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00182 K07466 - gmx:100778597 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00182 05 1990383 1998974 Aip05g00182 05 1990383 1998974 ECH