Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00174 ATGGCAGATTCAATGTTGAGGGTGGAGAATATTGCAGGAAAAGGAAGAGGCCTTGTAGCCTCTCAAGCTCTCAAAGCTGGCCAAGTTATCCTCACTGAACCCCCTCTCATTCTCTATTCTTCTTCCCCTCTTACTTCTTCTTCTTCTTACTGTGATCACTGCTTCAGAACCCTACCTCCTACTCTTCTTTCATGTCCTTCTTGTCTCAACCACCATTTCTGCAGCAACAAGTGCTTCTCTACTTCCCTCAATTCCTCTCATTCCTCCACTGTTTGCCAAGCACTCTTATCACTTCAACATTCACCACTGCTTCAACAACACCATCAAGTGCAAGCGCGTTTTGTTGTTGCTCTTCACAACCTTGCAGTTTCTGAGATCAACACTCTGCTTTCTCTACATGGCACCCCAGATGATTCTATCCTTCAAGATGCAAACTTTCTTCATGATCTAATCTCACCCCTTTTTCCCAACATCAAGCTTAGTGTTGATCTTGTTGCTCAGGCTCTTGCAAAGGACAGGATCAATTCCTTCTGCTTGATGGAGCCTTATAACCCTAATGGACCTCAGAGATCAATTAAGGCATATGGGATATACCCAAAAGCCACAATGTTTAACCATGATTGTGTTCCCAATGCTTGCAGGTTTGATTATATGAACACTACTTATACTGATACTAATACTAATCACATTGTTATAAGGTTGATTAAGGATGTTGATGAAGGAGAAGAGATTTGCATAAGCTATTTTAGGATTGGGAGGGATTATGCTACAAGGAAGAGGATCTTGATGGAGGATTATGGGTTTGTTTGTGGGTGTGAGAGGTGCAAGGTTGAAGCAAGTTGGAGCAATAATGATGAGAATGAAGATCATGATCATGTGCCACATGTAAGGTTTCTTAAGAAGCATGTTTGTAATATCAAGAATTGTGGTGGCACTTTGGCACCTGTTCCTCCAAAACATGATGCACCGTTTAATAATAATGTTCTTGAGTGTAATTTTTGTGGCAATTTCAAAATTGATGATGATGATGATGATGATGATGATGATGTTATATAA 1056 0.4053 MADSMLRVENIAGKGRGLVASQALKAGQVILTEPPLILYSSSPLTSSSSYCDHCFRTLPPTLLSCPSCLNHHFCSNKCFSTSLNSSHSSTVCQALLSLQHSPLLQQHHQVQARFVVALHNLAVSEINTLLSLHGTPDDSILQDANFLHDLISPLFPNIKLSVDLVAQALAKDRINSFCLMEPYNPNGPQRSIKAYGIYPKATMFNHDCVPNACRFDYMNTTYTDTNTNHIVIRLIKDVDEGEEICISYFRIGRDYATRKRILMEDYGFVCGCERCKVEASWSNNDENEDHDHVPHVRFLKKHVCNIKNCGGTLAPVPPKHDAPFNNNVLECNFCGNFKIDDDDDDDDDDVI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00174 351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 340 IPR044238 -
Aip05g00174 351 Gene3D - 103 176 - -
Aip05g00174 351 SMART set_7 4 255 IPR001214 GO:0005515
Aip05g00174 351 Gene3D - 50 101 - -
Aip05g00174 351 ProSiteProfiles SET domain profile. 1 249 IPR001214 GO:0005515
Aip05g00174 351 Gene3D SET domain 17 276 IPR046341 -
Aip05g00174 351 CDD SET_SMYD 175 275 - -
Aip05g00174 351 SUPERFAMILY SET domain 4 270 IPR046341 -
Aip05g00174 351 Pfam SET domain 15 248 IPR001214 GO:0005515
Aip05g00174 351 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 3 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00174 Aip-Chr5 1907261 1908378 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip05g00174 SET 2.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00174 - - gmx:100808530 433.721