Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00162 ATGGGAAGTAGTTATGGTGGCGGAATTGGAGGAGGGGAAGGTGGTTATGGGGTGGTGATGAGTATGACGAGAGAGCCTAAGCCTAGGTTGAGGTGGACAACCGATCTTCATGATCGCTTTGTGGATGCCGTCACCAAACTTGGTGGCCCGGATAAAGCAACTCCCAAATCTGTTCTGAGGATAATGGGTTTGAAAGGCTTGACATTGTATCATTTGAAGAGCCACTTACAGAAATATAGACTTGGACAACAAGCTAAAAAACAAAATGAAGAACATCACAAAGAGAACAATAGATATTCATATGTGAATTTCAGCAATAGTTCTTCAGAGTTTAGCACTAGTTTCAGAGGTGATAATGAAAAGGGAGAAATTCCAATAGCAGAGGCATTGAGACATCAAATTGAAGTCCAAAAGAGACTGGAAGAACAACTAGAGGTACAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTACAAGCTGTGTTAGAGAAAGCTCAGAGGACACTTTCCATGGAAGGTTCAGGCAATAATCTAGAAGCATCAAGAGCTCAATTGACCGAATTCAACTCTGCCTTATCTAATTTTATGGAAAACATGAACAACAAAGATAACAAACAAAGCATATTAGACATGAATGATTTTTATAGTAAAGTCCATAGTTCAGGTTTCCATAATTACCATGAAGTAATAAGGAGAGAAAAAAATATTGATCAAAAGCCTAAGATTGAAGAAGGTTCAATTCAGTTTGACTTAAACAGCAAAGGTAGCTATGATCTTGTATCAGGTGGTGGTGGATCTGAAATTGAAGCCAAAATGCTTTCATATAGGCTTTGA 843 0.3843 MGSSYGGGIGGGEGGYGVVMSMTREPKPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRIMGLKGLTLYHLKSHLQKYRLGQQAKKQNEEHHKENNRYSYVNFSNSSSEFSTSFRGDNEKGEIPIAEALRHQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRTLSMEGSGNNLEASRAQLTEFNSALSNFMENMNNKDNKQSILDMNDFYSKVHSSGFHNYHEVIRREKNIDQKPKIEEGSIQFDLNSKGSYDLVSGGGGSEIEAKMLSYRL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00162 280 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 27 82 IPR006447 GO:0003677
Aip05g00162 280 SUPERFAMILY Homeodomain-like 26 84 IPR009057 -
Aip05g00162 280 Pfam MYB-CC type transfactor, LHEQLE motif 125 171 IPR025756 -
Aip05g00162 280 Gene3D - 26 84 - -
Aip05g00162 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 264 IPR044848 GO:0003700
Aip05g00162 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 84 IPR017930 -
Aip05g00162 280 Coils Coil 127 157 - -
Aip05g00162 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 264 - -
Aip05g00162 280 Pfam Myb-like DNA-binding domain 30 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00162 Aip-Chr5 1824195 1827455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00162 1 197 G2-like Transcription Factor Family AT3G24120 50.249 1.03e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip05g00162 Myb_DNA-binding 6.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00162 - - adu:107487134 482.641