Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00140 ATGTGGGATACCATTGCTGGCGGTGATTCTGAGGATGATCATGATGGTGTTAGGAACGTGGATGATGACAACTTTATAGATGACACTGGGGTGGAAGCTGGTGGTTACTATGGCAGTGATGAACCTCGTTCTCCTGGTGATGCTCCCCAGGCAGAGGAAGGTGAAGAGGATGATGAAATTAAGGATCTTTTCAAGGTAGGTAAGAAAAAGAAGAAGAATGAGAGAAGTCCTGCAGAAATAGCTTTATTAGTTGAGAACGTCATGGCTGAGCTTGAAGTCACAGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCCATTAATAAACTAAAGAAGTTGGATCTTCTAACAGAAGTCCTCTCGAAGAAACAGCTCCAATTAGAGTTTTTGGACCATGGAGTACTAACTTTGTTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATCAACATACGCACAGCAATTTTGAATATTTTAAATGATTTTCCTATTGACCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGTCTTGGGAAGGTTGTGATCATGTTCTTATCGAAGTCCGACGAAGAAATCAATGTAAATAGAAAACTAGCTAAGGAACTGGTTGACAAATGGAGCCGACCCATATTTAATAAGAGTACACGGTTTGAGGACATGAGAAATGCTGAGGACGACAGGATTCCTTTCAGGAGGCCAACTGTTAAAAAGCCGGCAAATAAAGCAGCAGGGATGGAATCTAGAGATGGTGATCTTGATTTAGAATTTTCACAGCCTAGGTCTGGACAGTCTTCTTCAAGGCAACATGCATCAAGGCCAGAAGCAACACCTTTGGATTTTGTGATCCGTCCCCAGTCTAAAATTGATCCAGAAGAAGTTAGAGCGCGAGCAAAAGCTGCCGCACAAGATCAGCAGAGAATGAAGATGAATAAGAAGTTGCAGCAGTTGAGGGCACCAAAGAAGAAGCAGCTTCAAGCTACAAAACTAAGTGTGGAGGGTCGTGGCATGATCAAATATTTGTAG 1050 0.4276 MWDTIAGGDSEDDHDGVRNVDDDNFIDDTGVEAGGYYGSDEPRSPGDAPQAEEGEEDDEIKDLFKVGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLDLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILNILNDFPIDLEQYDRREQLKKSGLGKVVIMFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNAEDDRIPFRRPTVKKPANKAAGMESRDGDLDLEFSQPRSGQSSSRQHASRPEATPLDFVIRPQSKIDPEEVRARAKAAAQDQQRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMIKYL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00140 349 MobiDBLite consensus disorder prediction 233 334 - -
Aip05g00140 349 MobiDBLite consensus disorder prediction 7 25 - -
Aip05g00140 349 PANTHER PROTEIN IWS1 HOMOLOG 1 1 349 IPR044204 GO:0009742|GO:0032784
Aip05g00140 349 MobiDBLite consensus disorder prediction 1 62 - -
Aip05g00140 349 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 77 225 IPR035441 -
Aip05g00140 349 ProSiteProfiles TFIIS N-terminal domain profile. 138 222 IPR017923 -
Aip05g00140 349 Coils Coil 84 104 - -
Aip05g00140 349 Pfam TFIIS helical bundle-like domain 164 219 IPR017923 -
Aip05g00140 349 MobiDBLite consensus disorder prediction 266 281 - -
Aip05g00140 349 PANTHER PROTEIN IWS1 HOMOLOG 1 1 349 - -
Aip05g00140 349 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 133 223 IPR035441 -
Aip05g00140 349 MobiDBLite consensus disorder prediction 294 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00140 Aip-Chr5 1639159 1643453 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aip05g00140 Med26 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00140 K17498 - gmx:100801805 612.068