Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00130 ATGATACCAATCTTGAAAGCTAATATCTTAGAGAATACAACATACCTGAATGATTTTGACGAGGAATATTGGAAGGAAAGAGCAGCAATTGCTGAAAAAGATAACAAAGAAGCATATTTCTTAAATCCATACGAGATTTCTGGGAACTTCAGTTCTACTGTTTTAGAAGACATAGTTGGAAACAAGCATGGAAGAAGGAGCTTGAAGGGTAAAAATGCAAGAGTTCCATGCATGGCAACCAACAACATTGATAGATGTTGGAGGTGTGATCCTAATTGGGCAAAGTATCGTCAAAAGCTTGCAAATTGTGTTCAAGGTTTTGGAAAAAACACAATTGGTGGAAAAAATGGTCCAATTTATATAGTTACTGATTCTTCAGACAACGACATGGTTAATCCAAAACCAGGTACTCTTCGCCATGCAGTCACACGAACTGGGCCATTGTGGATTATCTTTGCACGTAGTATGTTTATTAGACTCAACCAAGAACTCATAATGACTAGTGACAAAACTATTGACGGAAGAGGAGTTGATGTCCACATTACTAGAGGTGCAGGCATCACCATACAGAACATTAAAAATGTGATTATTCATGGAATTAAGATTTATAATATTGTTCCGGGTTCCGGTGGACTTATCAGAGATTCTGAGACTCATTTTGGTCAAAGGTTAAGCACAGAAGGTGATGGAATCTCTATTTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCTATGAGAAAATGTGCAGATGGTCTCATTGATGCTATTATGGGATCTACAGCTATTACCATTTCTAATAGTCATTTCACAGATCAAAATCACGTTATCCTGTTTGGTGGAACTAACAATGATTATACTCACTGGCAAATGTATGCCATTGGTGGTAACAAGAATCCAACTATTATTAGTGAGGGCAATCGATTTTGGGCTCCGGATAATATTCATGCTAAAGAGGTAACAAAAAGAGTGGACGCAAATATTGGAGAATGGAAATCATGGCAATGGAGATCAATTAATGACGAGTTATTGAATGGAGCATTTTTCGTGCAATCGGGATCTGAGTTGAGCGGCGTGGATATGCCGTGGCCATGGCGTCATGCCACAGAAAGTATCAAAATTTTCGATGGCTTCCGGGCCGGCATTGATCTTGTTGTTCTGTTCTGTCTGTCGTCATCCAAATTGATAAATACACGCGCTTTTTTCACTCGGCTTGTTTTTTCTCTCACAATTGCTCGGTTGTCATTGAGTTGGTCTTGTAGAGAGTGTTTGGAACTGTGGAATTTTCTTCTCTGA 1296 0.3873 MIPILKANILENTTYLNDFDEEYWKERAAIAEKDNKEAYFLNPYEISGNFSSTVLEDIVGNKHGRRSLKGKNARVPCMATNNIDRCWRCDPNWAKYRQKLANCVQGFGKNTIGGKNGPIYIVTDSSDNDMVNPKPGTLRHAVTRTGPLWIIFARSMFIRLNQELIMTSDKTIDGRGVDVHITRGAGITIQNIKNVIIHGIKIYNIVPGSGGLIRDSETHFGQRLSTEGDGISIFGSSNIWIDHVSMRKCADGLIDAIMGSTAITISNSHFTDQNHVILFGGTNNDYTHWQMYAIGGNKNPTIISEGNRFWAPDNIHAKEVTKRVDANIGEWKSWQWRSINDELLNGAFFVQSGSELSGVDMPWPWRHATESIKIFDGFRAGIDLVVLFCLSSSKLINTRAFFTRLVFSLTIARLSLSWSCRECLELWNFLL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00130 431 Pfam Pectate lyase 165 283 IPR002022 -
Aip05g00130 431 SUPERFAMILY Pectin lyase-like 71 356 IPR011050 -
Aip05g00130 431 PANTHER PECTATE LYASE 282 357 - -
Aip05g00130 431 PANTHER PECTATE LYASE 2 283 - -
Aip05g00130 431 Gene3D - 283 364 IPR012334 -
Aip05g00130 431 Gene3D - 80 282 IPR012334 -
Aip05g00130 431 PRINTS Pollen allergen Amb family signature 127 152 IPR018082 -
Aip05g00130 431 PRINTS Pollen allergen Amb family signature 227 248 IPR018082 -
Aip05g00130 431 PRINTS Pollen allergen Amb family signature 103 120 IPR018082 -
Aip05g00130 431 PRINTS Pollen allergen Amb family signature 163 179 IPR018082 -
Aip05g00130 431 SMART amb_all 155 315 IPR002022 -
Aip05g00130 431 PANTHER PECTATE LYASE 18-RELATED 282 357 IPR045032 GO:0030570
Aip05g00130 431 PANTHER PECTATE LYASE 18-RELATED 2 283 IPR045032 GO:0030570
Aip05g00130 431 Pfam Pectate lyase, N terminus 18 68 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00130 Aip-Chr5 1522808 1526495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00130 21 353 Polysaccharide Lyase AT1G14420 53.786 1.25e-140 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00130 K01728 - gmx:100810857 510.375