Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00122 ATGAAGGATCTCTACAATTTCACAAAGAATTATGCTGGATTTGCTGGAGATGATGCTCCAAGGGCAGTGTTCCCAAGCATTGTGGGGCGTCCGCGGCACACGGGAGTGATGGTTGGAATGGGACAAAAGGATGCATATGTGGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACCCTCAAGTACCCAATTGAGCATGGCATTGTTAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACTTTCTACAACGAGCTTCGTGTGGCTCCTGAAGAGCACCCTGTTCTTCTCACTGAAGCACCTCTCAATCCCAAGGCCAATCGTGAGAAAATGACCCAAATCATGTTTGAGACCTTCAATGCTCCTGCCATGTATGTTGCCATCCAAGCTGTGCTCTCCCTTTATGCTAGTGGCCGCACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTGAGTCACACAGTTCCAATATACGAAGGGTATGCCCTGCCACACGCAATCCTGCGTTTGGACCTTGCAGGTCGTGATCTGACAGATTATCTAATGAAAATCTTGACGGAGCGTGGATACTCCTTCACAACCTCTGCTGAGCGTGAAATTGTGAGAGACATGAAGGAGAAGCTCTCCTACATTGCTCTGGATTACGAGCAGGAGCTGGAAACTTCCAAGACGAGCTCGGCCGTGGAGAAGAGCTACGAGCTGCCGGACGGTCAGGTGATCACAATAGGGGCGGAAAGGTTCCGGTGCCCGGAAGTGCTGTTCCAGCCTTCCATGATCGGAATGGAAGCCGCAGGCATACACGAAACGACTTACAACTCCATCATGAAGTGTGATGTTGATATCAGGAAGGATCTTTATGGTAACATTGTTTTGAGTGGTGGAACCACAATGTTTCCGGGTATTGCTGATAGGATGAGCAAGGAGATTTCTGCATTGGCACCCAGTAGCATGAAGATTAAGGTTGTTGCACCGCCAGAGAGGAAGTATAGTGTCTGGATTGGAGGCTCCATTTTGGCTTCACTCAGCACCttccaacaggtatcaacttcacgtgaagtcgacttcacctga 1074 0.4711 MKDLYNFTKNYAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTSAEREIVRDMKEKLSYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVSTSREVDFT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00122 357 PANTHER ACTIN 12 349 IPR004000 -
Aip05g00122 357 PRINTS Actin signature 108 121 IPR004000 -
Aip05g00122 357 PRINTS Actin signature 19 28 IPR004000 -
Aip05g00122 357 PRINTS Actin signature 229 245 IPR004000 -
Aip05g00122 357 PRINTS Actin signature 42 53 IPR004000 -
Aip05g00122 357 PRINTS Actin signature 54 76 IPR004000 -
Aip05g00122 357 PRINTS Actin signature 133 152 IPR004000 -
Aip05g00122 357 Pfam Actin 12 353 IPR004000 -
Aip05g00122 357 ProSitePatterns Actins and actin-related proteins signature. 97 109 IPR020902 -
Aip05g00122 357 Gene3D - 131 331 - -
Aip05g00122 357 SMART actin_3 6 356 IPR004000 -
Aip05g00122 357 CDD NBD_sugar-kinase_HSP70_actin 67 174 - -
Aip05g00122 357 Gene3D Actin; Chain A, domain 4 173 264 - -
Aip05g00122 357 SUPERFAMILY Actin-like ATPase domain 12 146 IPR043129 -
Aip05g00122 357 ProSitePatterns Actins signature 1. 46 56 IPR004001 -
Aip05g00122 357 PANTHER ACTIN-4 12 349 - -
Aip05g00122 357 SUPERFAMILY Actin-like ATPase domain 140 353 IPR043129 -
Aip05g00122 357 Gene3D - 12 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00122 Aip-Chr5 1402364 1405325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00122 12 352 Cytoskeleton Gene Families AT3G12110 95.308 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00122 K10355 - gmx:100798523 665.225