Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip05g00113 | ATGAGCTTTCAAGACATCGAGGCCGGCCGGCCGTTCGCTTCCCGCCGAGGCCACATCAACGGCAAGCAAGACCCCACTCAGGCGGTGGCTGCCGGAATTTTCCAGATCAACACTGCGGTCTCCACCTTCCAGAGGCTCGTTAACACCCTAGGAACCCCCAAAGACACCCCCGAGCTCCGCGAGAAGCTGCACAAGACAAGGCTGCACATTGGACAATTGGTGAAGGACACTTCAGCGAAGCTTAAACAAGCTAGTGAAATTGATCACCAATCTAATATCAATGCAAGCAAGAAGATAGCAGATGCTAAACTCGCGAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCGGCAGAGAGGGAAACAGCTTACACCCCATTTGTTCCACAAGCAGCTCCATCCAGCTATACAGCTAATGAAGCAGATGCTAATTCTGGTAAGACGCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGGCAGGAGGTGGTGTTCTTAGATAATGAGATTGCCTTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGCATTCAAGAAATTCAGCAGCAAATTGGTGAAGTAAATGAAATTTTTAAAGACCTTGCTGTGCTTGTGCATGAACAAGGAGCTATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGCAGCAACTGCACAAGCAAGATCTCAACTTGCTAAAGCTTCAAAGACTCAAAGATCAAATTCTTCTTTGACATGCTTGCTTTTGGTGATATTTGGAATTGTGCTTCTAATTGTCATCGTTGTTCTGGCTGCTTAG | 819 | 0.4664 | MSFQDIEAGRPFASRRGHINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHQSNINASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAAPSSYTANEADANSGKTPEQRALLVESRRQEVVFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHAATAQARSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIVVLAA | 272 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip05g00113 | 272 | Gene3D | - | 173 | 272 | - | - | |
| Aip05g00113 | 272 | PANTHER | SYNTAXIN | 2 | 271 | IPR045242 | - | |
| Aip05g00113 | 272 | ProSitePatterns | Syntaxin / epimorphin family signature. | 185 | 224 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Aip05g00113 | 272 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 179 | 241 | IPR000727 | - | |
| Aip05g00113 | 272 | SMART | tSNARE_6 | 174 | 241 | IPR000727 | - | |
| Aip05g00113 | 272 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Aip05g00113 | 272 | SUPERFAMILY | t-snare proteins | 23 | 234 | IPR010989 | GO:0016020|GO:0016192 | |
| Aip05g00113 | 272 | Pfam | Syntaxin-like protein | 30 | 129 | IPR006011 | GO:0016020 | |
| Aip05g00113 | 272 | CDD | SynN | 23 | 145 | IPR006011 | GO:0016020 | |
| Aip05g00113 | 272 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 2 | 271 | - | - | |
| Aip05g00113 | 272 | Pfam | SNARE domain | 216 | 267 | IPR000727 | - | |
| Aip05g00113 | 272 | SMART | SynN_4 | 15 | 127 | IPR006011 | GO:0016020 | |
| Aip05g00113 | 272 | Gene3D | - | 20 | 133 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip05g00113 | Aip-Chr5 | 1288860 | 1291522 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip05g00113 | 1 | 260 | SNARE and Associated Proteins | AT5G46860 | 78.927 | 2.71e-148 | 414 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip05g00113 | - | K08488 | gmx:547656 | 413.305 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aip05g00113 | 05 | 1288860 | 1291522 | Aip05g00113 | 05 | 1288860 | 1291522 | ECH |