Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00110 ATGACATTGGTTATCAGAGAAAGGAGGCACCAACAAGCTCTAAGGCTCTCTTTGCCGCAAAGAAACCCTCCTTCGTTATCGTCGTCGTCGTCGTCATCGTCGTCGTCGTCACCACTTCCACATGCATCAGTATCGTTATCAGGATCTTCTTCATCCTCCTCCTCGGTCGTAGTTAACCTCTCAGACCTCGAGAAGCTTGCGGTTCTTGGCCATGGAAACGATGGCATAGTGTACAAGGTTCGACACAAGAAGAGTCATTGCTTCTACGCATTGAAAGTGATACGCTCCAACTCGATAATCGGCATTGATGGCAGCCCTAACCACGTGGAGGCCGAGATTCTGAAGAAGATGGATTCGCCGTACGTAGTGAAGTGCCATGCGGTTTTCGACAACGGTTCTTGCAGTGATAATGGTGTAAGCTTTGTTATGGAGTACATGGGTGGAGGGTCGTTGTATGATATCTTGAAACATCATCGTACACTGTCGGAGGATGTGATCTCTGATGTTGCGAAGCGCGTGTTGGAAGGGCTTAACTATTTGCATGCCATGCACGTTGTGCACAGAGACATTAAGCCCTCGAACTTGCTCGTGAATGAGAAGGGTGAGGTGAAGATAGCGGATTTTGGGGTGAGCCACGTGGTGGTGGAAGAGAAAGAGAGTAATGGTGGTGGTGGTGATTATGATCTTCATCACTATGGCAATGCAGGCACGTGTGCATACATGAGTCCTGAAAGGATTGATCCTGAGAGTTGGAGAGGAGGTGGTGGTGAGGATGGTTTTGCCGGCGATGTTTGGTCGATGGGGGTGGTGGTTTTGGAGTGCTTTCTGGGGCATTTTCCGTTGATCGGGGCGGAGCAGAGACCGGACTGGGCAACACTGATGTGTGCCATTTGCTTTGGGGAAAAGGTGGAGATGCCAGAGACGGCGTCGCCGGAGTTCAAGAGCTTTGTACTGAGGTGTCTTGAGAAGGATTGGAGGAAGAGGGCAACAGTGAAGGAGCTTCTTCAACACCCTTTTGTGAATACAGGGTGCTGCAATTTCAGTAGAAAAAGGCTTGGTGATTATGTTGTTCTTCAGGGGTGA 1083 0.4968 MTLVIRERRHQQALRLSLPQRNPPSLSSSSSSSSSSSPLPHASVSLSGSSSSSSSVVVNLSDLEKLAVLGHGNDGIVYKVRHKKSHCFYALKVIRSNSIIGIDGSPNHVEAEILKKMDSPYVVKCHAVFDNGSCSDNGVSFVMEYMGGGSLYDILKHHRTLSEDVISDVAKRVLEGLNYLHAMHVVHRDIKPSNLLVNEKGEVKIADFGVSHVVVEEKESNGGGGDYDLHHYGNAGTCAYMSPERIDPESWRGGGGEDGFAGDVWSMGVVVLECFLGHFPLIGAEQRPDWATLMCAICFGEKVEMPETASPEFKSFVLRCLEKDWRKRATVKELLQHPFVNTGCCNFSRKRLGDYVVLQG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00110 360 Gene3D Transferase(Phosphotransferase) domain 1 57 352 - -
Aip05g00110 360 ProSiteProfiles Protein kinase domain profile. 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00110 360 MobiDBLite consensus disorder prediction 15 51 - -
Aip05g00110 360 Pfam Protein kinase domain 64 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00110 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Aip05g00110 360 SUPERFAMILY Protein kinase-like (PK-like) 60 343 IPR011009 -
Aip05g00110 360 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 342 - -
Aip05g00110 360 SMART serkin_6 63 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00110 360 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 342 IPR045269 GO:0004674|GO:0006914
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00110 Aip-Chr5 1280019 1281101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00110 1 341 MAP Kinase Kinase Gene Family AT1G32320 52.493 8.88e-111 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Aip05g00110 Pkinase 1.1e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00110 - K20604 adu:107487017 667.922