Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00109 ATGAGTGGAGTGAGTACCAGCGGTGGAGACGATGGCGGTGGCATGCTCGTGCCGGCGCCGGCACCGATGCCGATGCCGAGTACGAACACGCCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTAGACGACCCTTCAACGGACCCGATCGTGTCGTGGAGCGCAACGAACAATAGCTTCGTGGTTTGGAACCCACCGGAATTCGCGAGGGACCTTTTGCCGAAACACTTCAAGCACAACAACTTCTCCAGCTTCGTTAGGCAGTTGAACACTTACGGTTTCAGGAAGGTTGATCCAGATCGCTGGGAATTTGCAAATGAAGGATTTTTGAGGGGTCAAAAGCACTTACTTAGAACTATAACTCGGCGGAAACCTGCCCATGGTCATAGTCATCAACAGGCTCCACAATCACATGGACAGAGTTCAACAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGATTGAAGAAGAGGTTGAGAGACTTAAAAGAGATAAGAACGTCCTCATGCAAGAGCTTGTGAGGTTGCGACAGCAGCAACAGGCCACCGATAGCAAGATGCAGACAATGGCTCAGCGCCTTCATGGAATGGAGCAACGACAACAACAAATGATGTCATTTCTGGCAAAAGCTGTTCAAAGCCCAGGATTCTTTGCTCAGTTTGTGCAACACCAAAGTGAGAACAATAGACGCATAACTGAAGTCAATAAAAAGCGTCGGCTCAGGCCGGAAGGCATTTCCGAAACTGAGCCTGCTACTGTTCCTGCTGGACAAATTGTGAAATATCAGCCTATGATGAATGACCTAGCAAAATCAATGCTAAAGCAAATCATCAAATGGGATGCTTCTCATGTCGATGCTCTAAGTAAAAACTCAGATAATTACTTGATTGCCGATGACACCATGACTTCAACCTGGCCTTCTGGTTCTGGGGTAACACTTCAAGAGGTTCCTCCGGCTTCAGTGCATTCCTCCCACACTCCTGCTGCTACGGGGACTCAAGGACACATCCCATCAGCAGCCATACCTGATATTCCGTCTTTACCACAAGTTGCAGCTCCTGAAAAAGTTACAAAGGATGGATCATCTGGGGCACCTTCTATCCATGCTTCTCAAGCAGATGTTATCATGCCTGATCTTCCTTCGATAAATGAGACAGAGACAAGAAGTAATATTCAAATGCCCGAAGAAAATTATAGGGGACCAGAGAAAGGGGACGAGGGATATATGGATCCTAATTCACTGGGAGTTGGTGCGTCATTTCCTATTGATATAGAAGGTTTTTCCCCTGAAATAGACATCGATGATTTCTTATCGAATCCTTCTATCTGGGATGATCTCTTGCAAACTCCAGTGCCCGTGGATATTGAGGAAGATGTTGCCAAAGAGTCCAAGGGTAATGGGGTGGAAACAACAGAAAATGGATGGGACAAAACTCAACGCATGGATCACCTTACTGAGCAGATGGGTCTTCTTTCTTCGGATGTACAAAAGAGAGTTTGA 1503 0.4724 MSGVSTSGGDDGGGMLVPAPAPMPMPSTNTPPPFLSKTYDMVDDPSTDPIVSWSATNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRTITRRKPAHGHSHQQAPQSHGQSSTVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATDSKMQTMAQRLHGMEQRQQQMMSFLAKAVQSPGFFAQFVQHQSENNRRITEVNKKRRLRPEGISETEPATVPAGQIVKYQPMMNDLAKSMLKQIIKWDASHVDALSKNSDNYLIADDTMTSTWPSGSGVTLQEVPPASVHSSHTPAATGTQGHIPSAAIPDIPSLPQVAAPEKVTKDGSSGAPSIHASQADVIMPDLPSINETETRSNIQMPEENYRGPEKGDEGYMDPNSLGVGASFPIDIEGFSPEIDIDDFLSNPSIWDDLLQTPVPVDIEEDVAKESKGNGVETTENGWDKTQRMDHLTEQMGLLSSDVQKRV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00109 500 MobiDBLite consensus disorder prediction 123 143 - -
Aip05g00109 500 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00109 500 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00109 500 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00109 500 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00109 500 Gene3D - 27 124 IPR036388 -
Aip05g00109 500 MobiDBLite consensus disorder prediction 315 334 - -
Aip05g00109 500 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 485 IPR027725 -
Aip05g00109 500 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00109 500 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 8 485 - -
Aip05g00109 500 SUPERFAMILY "Winged helix" DNA-binding domain 30 123 IPR036390 -
Aip05g00109 500 MobiDBLite consensus disorder prediction 460 481 - -
Aip05g00109 500 MobiDBLite consensus disorder prediction 1 21 - -
Aip05g00109 500 Coils Coil 152 179 - -
Aip05g00109 500 MobiDBLite consensus disorder prediction 356 409 - -
Aip05g00109 500 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00109 Aip-Chr5 1265377 1268488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00109 1 493 HSF AT1G32330 50.672 8.16e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip05g00109 HSF_DNA-bind 2.4e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00109 K09419 - gmx:100815121 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00109 05 1265377 1268488 Aip05g00109 05 1265377 1268488 ECH