Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00108 ATGGATGCGAGTACCAGCGGTGCAGATGGCGGTGGCGGAGGAAGCACTAACGGGGCCACGCCGGCGCCGGTACCGATTCCGAACGCGAACGCGCCGCCGCCGTTCCTGAGCAAGACGTACGACATGGTGGACGATCCTTCAACGGACGCAATCGTGTCGTGGAGCGCTACGAACAACAGCTTTGTGGTTTGGAACCCACCGGAATTCGCGAGAGACCTTTTGCCGAAATACTTCAAGCACAACAACTTTTCCAGCTTCGTTAGACAGCTCAACACTTATGGTTTTAGGAAGGTTGATCCAGATCGATGGGAATTTGCAAATGAGGGCTTTTTGAGGGGCCAAAAGCACTTGCTTAGGAATATAACACGAAGAAAACCTGCCCATGGTCATAATCATCAACAATCTCAGCAATCACATGTACAAAATTCATCAGTAGGGGCGTGCGTAGAAGTTGGCAAGTTTGGGCTCGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAAAATGTGCTCATGCAGGAACTTGTCAGGCTGAAGCAGCAACAACAGACCACTGATGGCCAACTGCAAACAATGGTTCAACGCCTTCAGGGCATGGAGCAAAGACAACAACAAATGATGTCATTCCTTGCTAAAGCCGTACAGAGCCCTGGCTTCTTTGCGCAGTTCGTACAACAGCAAAATGAGAATAATAGGCGTATAAGTGAAGTCAACAAAAAGCGCCGGCTCAAGCAAGAAGGTATTGCTGAAACTGACTGTGCTGCTGCTCCTGATGGGCAAATTGTTAAGTATCAACCTCTGATTAACGATTCAGCAAAAGCAATGCTAAGACAGATCATGAAATGGGATACTTCTCGAGCAGAATCTTTTAGTAACAACCCTGATAATTACCTGATTGGTGATGGTTCGTCATCCTCATCTGGTGCGATGGACAGTGGCAGCTCCTCAAGCTGGACCTCTGGAGTAACACTTCAGGAGGTCCCGCCAACTTCAGTGCAGTCTTCTCATGTTCCAATTACTCTGGGGGCTCCAGGGCATGTTCCCTCAGCTTCCAAACCTGAAATTCAATCTTTACCACAGGCTGGAGCTCCTGAAAAGGTTACAAGGGTTGGAGCATCTGACATACCTTCTATCCATGTTCCTCAAGCAGATGTCATCATGCCTGATCTTGCACCAATAGATGAAATAGAGTCTGGAAGTATGCTTGGTATTCCGGAAGATAATTATATGGCTCCTGAAGCTGGTGATGAGGGATTTATGGATCCTGATTCATTGGGGGTTAGTGGATCATTTCCCATTGATTTCGAAGGAATTTCACCTGATGCGGACCTTGATGACTTCTTAGGAAATCCATCTATTTGGGATGAGCTTTTGCAAACCCCAGTGCAAGAGGATACTGAGACTGATATTGAAGCTTCCAAAGTTAATGAGGTGCAACCAGCCGAAAATGGTTGGGATAAAACTCAACATTTGGATCAACTTACAAAGCAGATGGGTCATCTTTCTTCTGAAGCAAAATAG 1518 0.4684 MDASTSGADGGGGGSTNGATPAPVPIPNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLRNITRRKPAHGHNHQQSQQSHVQNSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLKQQQQTTDGQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNENNRRISEVNKKRRLKQEGIAETDCAAAPDGQIVKYQPLINDSAKAMLRQIMKWDTSRAESFSNNPDNYLIGDGSSSSSGAMDSGSSSSWTSGVTLQEVPPTSVQSSHVPITLGAPGHVPSASKPEIQSLPQAGAPEKVTRVGASDIPSIHVPQADVIMPDLAPIDEIESGSMLGIPEDNYMAPEAGDEGFMDPDSLGVSGSFPIDFEGISPDADLDDFLGNPSIWDELLQTPVQEDTETDIEASKVNEVQPAENGWDKTQHLDQLTKQMGHLSSEAK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00108 505 Coils Coil 153 180 - -
Aip05g00108 505 SUPERFAMILY "Winged helix" DNA-binding domain 30 124 IPR036390 -
Aip05g00108 505 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-1 10 492 - -
Aip05g00108 505 MobiDBLite consensus disorder prediction 462 488 - -
Aip05g00108 505 MobiDBLite consensus disorder prediction 300 355 - -
Aip05g00108 505 Gene3D - 28 125 IPR036388 -
Aip05g00108 505 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00108 505 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00108 505 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00108 505 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 492 IPR027725 -
Aip05g00108 505 MobiDBLite consensus disorder prediction 300 337 - -
Aip05g00108 505 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00108 505 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00108 505 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00108 505 MobiDBLite consensus disorder prediction 1 31 - -
Aip05g00108 505 Coils Coil 490 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00108 Aip-Chr5 1259870 1263698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00108 1 504 HSF AT1G32330 52.830 2.65e-170 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip05g00108 HSF_DNA-bind 2.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00108 K09419 - gmx:100815121 710.679