Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00104 ATGTCAACCAGAAAGACCAGAGGAGGCAGAAACCACCGTAATCACCACCGTACCCCTCACCACGACGACGACGATGACTCCTTCACTCCGAAGCCTCTCCACCAACAACATCATCGTCAGCAGCAGCATTCCACTCCTCCGACTCACCACCGCCGCGGCCACCACAACCATTATCAACAACCAAAATTGCGTTTCGTCAAGAAATCCGAACTTGATTCTTCTGCTTCTGATTCCCTCCTTACCTCCGATCCTGTGGCGGTGCCTGCTGCTGATCACGTGACACCGCCACCACACGAGAACCACAAAGAAGAAGAGAACGAGAACAACAACAACAACAACAACATCAGTGTCACTGATGCCGTGACAGTAACAAGAGAGGTAGATCACAAGGCTTGTTCGAGCAACAGCAAGGAGGTGGATGACGACGATGCCGATGATTATGTTGTGAATAGGCTTCGTAGGTTATTGGATGCTGTGGAAGAGCCTGCGTTAATGGAGGAGCAGCTCAGTACCAATGACCAATTGCAGGAAGATGAGTTACTTGTGGTGGAGTCGATATACGGAGAAAATGTTAACAAGCTTGAAAGCTGGAAAGGCCTCCGTTGTTTTCAGATCCAAATACACATCGAAGTTTTGGGTGAAATTGCCATTATTGCTAAGCTGAACTCTTCTAATGAACTTGATGTTGCAAGCGGCAATTCGGATGACTTCTTTTACTCTTTCAAAGTTCAGTATCTTCCACCAATCGTTTTGACCTGCTTATTGCCCAAGTCATATCCAAGCCACCAACCACCTTTATTTACAGTCTCTGTTCAATGGTTGGAATCTTTAGATATTTTAAGTCTATGCTCCCAGTTGGATTCTATATGGGCAGAGCAGCAAGGGCAAGAAGTAATATACCAGTGGGTTGATTGGTTACAAAGTTCTTCTCTTTCTCACCTGGGATTTGATAAGGAAATTATCCTTGGTCGGAATGGCGTGAATTGTGTTGGAGATGAGCGTGTTGTTTCAGGTTCCATATCCCTTGATGCTGCTATTCCTTTCTTGCGAGGTTACAATAAAGAGCGGCATAATGAGAACTTCCTCAAAGAATTACATGAGTGTAGCATTTGCTTTAGCGAATATCCAGGTACCGAGTTTGTCCGGTTACCATGTCAGCATTTCTTTTGCTTGAAATGCTTGCAGACCTTCACTCAGATGCATGTAAAAGAAGGCACCATTAGTAATCTTCAATGTCCTGATTCAAAATGTAAGGTTATGATTCCACCTGGCCTTTTGAAACACTTGCTTGGTGATGAAGAGTATGAGCGCTGGGAATCCATGATGCTGGAGAGAACACTTGCATCAATGTCTGATGTTGTTTATTGCCCAAGGTGTGAAACACCTTGCATAGAGGATGAAGATCAGCATGCTCAATGCTCAAAATGCTTTTTTAGCTTTTGTACTCTTTGTCGGGAACGACGCCATGTTGGCATAGCATGCATGACACTAGATATGAAACTTCAAATTTTGCAGGACCGTCAAAATTCGTCCCAATTAAAGGAAGATCAAAAGCTACGGGAACGGGAGAAGATCAATGAAATGCTTAGTATGAAAGAAATTCATCGAGATTCCAAGTTGTGCCCTTCTTGTAGCATGGCAATCAACCGAACCGAAGGTTGTAACAAAATGAAGTGCAGTAACTGTGGAGCATACTTTTGTTACCGCTGCAACAAATTAATTGATCCATCAGACCCATATGGGCATTTCAGGGATGGATCCTGTGAATTGTTCCCACAAGAAATGATTGAGAACTGGCAAGAGCGCATTAACCATCGCCAGGTCGTAGGACAACTACAGGCTGAACTCTTTCGGGAACGCGGCCTGCCCTGTCCTAACTGTCGTCAGTTCAATGCAAAGGTTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAAAGCCATTACTGCTACTTGTGCAACGAAATTGTGAGGCGCGGGTCTAAGCATTATGGTCCAAAGGGCTGCAAACAGCACACTGAGGGATAA 2028 0.4467 MSTRKTRGGRNHRNHHRTPHHDDDDDSFTPKPLHQQHHRQQQHSTPPTHHRRGHHNHYQQPKLRFVKKSELDSSASDSLLTSDPVAVPAADHVTPPPHENHKEEENENNNNNNNISVTDAVTVTREVDHKACSSNSKEVDDDDADDYVVNRLRRLLDAVEEPALMEEQLSTNDQLQEDELLVVESIYGENVNKLESWKGLRCFQIQIHIEVLGEIAIIAKLNSSNELDVASGNSDDFFYSFKVQYLPPIVLTCLLPKSYPSHQPPLFTVSVQWLESLDILSLCSQLDSIWAEQQGQEVIYQWVDWLQSSSLSHLGFDKEIILGRNGVNCVGDERVVSGSISLDAAIPFLRGYNKERHNENFLKELHECSICFSEYPGTEFVRLPCQHFFCLKCLQTFTQMHVKEGTISNLQCPDSKCKVMIPPGLLKHLLGDEEYERWESMMLERTLASMSDVVYCPRCETPCIEDEDQHAQCSKCFFSFCTLCRERRHVGIACMTLDMKLQILQDRQNSSQLKEDQKLREREKINEMLSMKEIHRDSKLCPSCSMAINRTEGCNKMKCSNCGAYFCYRCNKLIDPSDPYGHFRDGSCELFPQEMIENWQERINHRQVVGQLQAELFRERGLPCPNCRQFNAKVGNNNHMFCWACQSHYCYLCNEIVRRGSKHYGPKGCKQHTEG 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00104 675 Gene3D - 508 615 - -
Aip05g00104 675 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 150 613 IPR031127 GO:0004842|GO:0016567
Aip05g00104 675 Pfam zinc-RING finger domain 367 414 IPR001841 -
Aip05g00104 675 MobiDBLite consensus disorder prediction 1 115 - -
Aip05g00104 675 SUPERFAMILY RING/U-box 616 672 - -
Aip05g00104 675 Pfam RWD domain 174 309 IPR006575 GO:0005515
Aip05g00104 675 ProSiteProfiles TRIAD supradomain profile. 364 593 IPR044066 -
Aip05g00104 675 Pfam IBR domain, a half RING-finger domain 531 573 IPR002867 -
Aip05g00104 675 Pfam IBR domain, a half RING-finger domain 436 494 IPR002867 -
Aip05g00104 675 SMART RWD2001b 178 313 IPR006575 GO:0005515
Aip05g00104 675 MobiDBLite consensus disorder prediction 17 33 - -
Aip05g00104 675 ProSiteProfiles Zinc finger RING-type profile. 368 416 IPR001841 -
Aip05g00104 675 SMART ring_2 368 415 IPR001841 -
Aip05g00104 675 SMART ring_2 456 544 IPR001841 -
Aip05g00104 675 SMART ring_2 624 653 IPR001841 -
Aip05g00104 675 Gene3D Ubiquitin Conjugating Enzyme 164 315 IPR016135 -
Aip05g00104 675 ProSiteProfiles RWD domain profile. 178 313 IPR006575 GO:0005515
Aip05g00104 675 ProSitePatterns Zinc finger RING-type signature. 385 394 IPR017907 -
Aip05g00104 675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 451 IPR013083 -
Aip05g00104 675 SMART ibrneu5 523 588 IPR002867 -
Aip05g00104 675 SMART ibrneu5 436 494 IPR002867 -
Aip05g00104 675 MobiDBLite consensus disorder prediction 1 16 - -
Aip05g00104 675 SUPERFAMILY RING/U-box 436 499 - -
Aip05g00104 675 SUPERFAMILY RING/U-box 527 583 - -
Aip05g00104 675 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 150 613 - -
Aip05g00104 675 MobiDBLite consensus disorder prediction 43 62 - -
Aip05g00104 675 SUPERFAMILY RING/U-box 363 448 - -
Aip05g00104 675 SUPERFAMILY UBC-like 169 308 IPR016135 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00104 363 596 ARIADNE family AT3G27710 24.793 6.71e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00104 K11971 - gmx:100500662 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00104 05 1215087 1219043 Aip05g00104 05 1215087 1219043 ECH