Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00103 ATGTCAGAACGGGGTGCATTCTCCGTTGATTCTGCCATGGATGCTTCTAACAGTAAAGGAGGAGAAGAGAATAAGAAGAAGAAGGAGCATAAGATTCCTTTTATGAAGCTGTTCTCTTTTGCTGACACTTATGATTTTGTGTTAATGGCCATTGGATCTGTTGGGGCGTGTATTCATGGTGCCTCTGTTCCTGTTTTCTTCATCTTCTTTGGCAAGTTGATCAATGTCATAGGTTTGGCTTATCTGTTTCCTAAGGAAGCTTCTCACAAAGTTGCTAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATACTATTTTCATCTTGGACAGAACGGCAAGCAGCAAAGATGAGATTGGCATATTTAAAATCAATGTTGAATCAAGACATAAGTCTCTTTGATACTGAGTCTTCCACAGGCGAGGTTATTTCTGCCATTACAAGTGACATTATCATAGTTCAAGATGCACTATCTGAAAAGGTAGGGAACTTCATGCACTACATAAGCAGATTCATAGCTGGGTTCACCATTGGGTTTGTGAGAGTGTGGCAGATTAGTCTTGTGACACTTTCAATAGTGCCGTTGATTGCACTTGCCGGAGGACTATATGCATATGTCACAATTGGGCTTATTGCAAAGGTTCGTAAAGCGTATGTGAGAGCTGGTGAAATTGCAGAAGAGGTAATAGGGAATGTTAGAACGGTTCAAGCATTTGCAGGAGAAGAAAGGGCAGTGAAATCATACAAAACGGCTCTAATGAACACTTACAAAAACGGTAGAAAAGCAGGATTAGCAAAGGGACTTGGACTGGGGTCAATGCACTGTGTCCTTTTTCTTTCATGGGCTTTGCTTGTTTGGTTCACAAGCGTTGTTGTTCACAAGAGTATTGCCAATGGTGGTGAGTCTTTCACCACCATGCTCAATGTTGTCATCGCTGGCCTGTCACTTGGGCAGGCAGCACCTGATATCTCCGCATTTATCCGGGCAAAGGCAGCAGCATATCCAATCTTTGAGATGATAGAGAGGGACACAATCAGCAAAAGAAGCTCAGGTCGAAAGCTAAGCAAATTGGAGGGCCGTATCCAATTCAGGGATGTTTGTTTCAGCTATCCGTCTCGGCCGGACGTAACTGTCTTCAACCACCTCTGTCTTGACATTCCTGCAGGGAAGATTGTAGCCCTTGTGGGAGGAAGTGGTTCTGGAAAGAGCACTGTTATATCGTTGGTCGAACGCTTCTATGAACCACTTTCAGGTCAGATACTATTGGACAGGAATGATATCAGGGAACTTGATCTCAAATGGCTTAGGCAGCAAATTGGACTCGTTAATCAGGAACCTGCACTCTTTGCTACAAGCATCAAGGAGAACATTCTCTATGGAAAAGATGATGCCACTCTTGAAGAATTAAAACGTGCTGTCAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGAAAGATTAGAAACTCAGGTTGGTGAGAGAGGGATACAGCTATCAGGTGGACAGAAGCAAAGAATTGCGATATCTCGAGCCATAGTGAAGAATCCATCAATCCTGTTGCTGGATGAAGCAACCAGTGCTCTGGATGCTGAGTCAGAGAAGAGTGTGCAGGAGGCTCTTGATCGGGTTATGGTGGGCCGGACAACTGTGATAGTAGCACACAGACTTTCTACTATTAGGAATGCAGATATGATAGCTGTTGTTCAAGGAGGGAAGATTGTGGAAACTGGAAACCATGAGGAGCTAATGTCCAATCCTACTAGTGTGTATGCCTCTCTTGTTCAACTCCAAGAGGCAAGTTCTCTGCAGCGCCTCCCCTCGGTCGGGCCTAGCCTGGGCCGCCAATCAAGCATAAAGTACTCAAGGGAATTGTCCCGGACAACAACAAGCTTTGGAGGTAGTTTTCGATCCGATAAGGATTCTATTGGGCGGATCTGTGATGAAGAAAATGCAAGCAAGCCAAAGCATGTTTCAGCAAGAAGGCTATATTCTATGATTGGTCCTGACTGGGTTTATGGGGTTTTTGGGACATTGTGTGCATTTGTTGCTGGAGCACAGATGCCACTCTTTGCACTTGGAATCTCGCATGCTCTTGTATCATACTATATGGATTGGGATACCACCAAACATGAAGTCAAGAAAATTGCTTTCCTCTTCTGTGGAGGAGCAGTCATAACTATCACTGTCCATGCCATTGAGCATCTTTGTTTTGGAATCATGGGAGAGCGCCTCACCCTTCGTGTCCGTGAAAGGATGTTTTCGGCTATTTTGAAGAATGAAATTGGCTGGTTTGATGATACAAGCAACACAAGTTCTATGCTTTCATCACGTTTAGAGACCGATGCAACTTTGTTGAGGACCATAGTTGTTGATCGTTCCACAATTCTGTTACAGAATGTTGCCCTGGTTGTTGCTTCATTCATTATTGCCTTCATGTTGAATTGGAGAATAACTCTTGTTGTCTTGGCCACATATCCTTTGATCATTTGTGGTCACATCAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGTTGGCCGGGGAAGCTGTTAGCAATATTCGCACGGTCGCTGCGTTTTGTTCTGAAGAAAAGGTCCTTGATCTCTATGCTAATGAGCTTGTTGATCCTTCGAAACGTTCGTTTCAAAGAGGCCAAATCGCTGGCATATTTTATGGGATTTCCCAGTTCTTTATTTTCTCATCTTATGGCCTTGCCTTGTGGTATGGATCCGTCTTAATGGAGAAGGAGCTTGCAAGCTTTAAATCAGTGATGAAGTCATTTATGGTTTTAATAGTAACAGCGCTGGCTATGGGCGAGACTTTGGCGCTCGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCGTCCGTTTTCGAAGTGATGGATAGGAAGACAGGCATAATAGGTGATGTTGGAGAAGAGTTGAAGACAGTGGAAGGAACAATTGAGCTCAAGGGAATCCATTTCAGCTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTCAATCTACTTGTTCCTTCAGGCAAGAGTATTGCCTTGGTTGGACAAAGTGGTTCTGGAAAAAGCTCTGTTATCTCCCTCATACTAAGATTTTATGATCCAACTTCTGGGAAAGTGCTGATTGATGGAAAAGATATAAGGAGACTCAATTTGAAATCTCTTAGGAAACACATTGGGCTTGTGCAGCAAGAACCGGCGCTTTTCGCGACATCAATTTACGAAAACATCCTTTATGGGAAAGAAGGAGCCTCTGATTCAGAAGTAATAGAGGCAGCGAAGCTTGCCAATGCTCATAACTTCATAAGTGGCCTTCCGGAGGGATACTCAACCAAGGTTGGGGAGCGAGGAGTTCAACTATCAGGCGGTCAGCGACAAAGAGTGGCCATTGCCAGAGCTGTCCTAAAGAACCCTGAAATCCTGCTCTTGGATGAAGCCACCAGCGCGCTCGATGTTGAATCCGAGCGCGTGGTTCAACAAGCTTTGGACCGGTTGATGCAGAACAGAACAACGGTTATTGTGGCACATAGGCTCTCCACAATAAGGAATGCTGATCAAATCTCAGTTTTGCAAGATGGCAAAATAATTGAGCATGGGACTCATTCCACTCTTATAGAAAATAAAAATGGATCTTACTTCAAATTAGTCAACCTTCAACAACAACAGCATCAACTATAG 3723 0.4365 MSERGAFSVDSAMDASNSKGGEENKKKKEHKIPFMKLFSFADTYDFVLMAIGSVGACIHGASVPVFFIFFGKLINVIGLAYLFPKEASHKVAKYSLDFVYLSIAILFSSWTERQAAKMRLAYLKSMLNQDISLFDTESSTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKTALMNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKSIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTISKRSSGRKLSKLEGRIQFRDVCFSYPSRPDVTVFNHLCLDIPAGKIVALVGGSGSGKSTVISLVERFYEPLSGQILLDRNDIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPERLETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADMIAVVQGGKIVETGNHEELMSNPTSVYASLVQLQEASSLQRLPSVGPSLGRQSSIKYSRELSRTTTSFGGSFRSDKDSIGRICDEENASKPKHVSARRLYSMIGPDWVYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTKHEVKKIAFLFCGGAVITITVHAIEHLCFGIMGERLTLRVRERMFSAILKNEIGWFDDTSNTSSMLSSRLETDATLLRTIVVDRSTILLQNVALVVASFIIAFMLNWRITLVVLATYPLIICGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMEKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKTGIIGDVGEELKTVEGTIELKGIHFSYPSRPDVIIFKDFNLLVPSGKSIALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDIRRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVIVAHRLSTIRNADQISVLQDGKIIEHGTHSTLIENKNGSYFKLVNLQQQQHQL 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00103 1240 Pfam ABC transporter 1015 1163 IPR003439 GO:0005524
Aip05g00103 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g00103 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Aip05g00103 1240 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1232 IPR003439 GO:0005524
Aip05g00103 1240 Gene3D - 352 601 IPR027417 -
Aip05g00103 1240 SUPERFAMILY ABC transporter transmembrane region 37 334 IPR036640 GO:0005524|GO:0016021
Aip05g00103 1240 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524
Aip05g00103 1240 MobiDBLite consensus disorder prediction 1 27 - -
Aip05g00103 1240 Pfam ABC transporter 382 529 IPR003439 GO:0005524
Aip05g00103 1240 Gene3D ABC transporter type 1, transmembrane domain 643 983 IPR036640 GO:0005524|GO:0016021
Aip05g00103 1240 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 981 - -
Aip05g00103 1240 CDD ABC_MTABC3_MDL1_MDL2 996 1234 - -
Aip05g00103 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1234 IPR027417 -
Aip05g00103 1240 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Aip05g00103 1240 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g00103 1240 Pfam ABC transporter transmembrane region 678 949 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g00103 1240 Pfam ABC transporter transmembrane region 51 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Aip05g00103 1240 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 600 IPR027417 -
Aip05g00103 1240 SMART AAA_5 1023 1226 IPR003593 -
Aip05g00103 1240 SMART AAA_5 389 581 IPR003593 -
Aip05g00103 1240 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 337 - -
Aip05g00103 1240 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Aip05g00103 1240 Gene3D ABC transporter type 1, transmembrane domain 36 604 IPR036640 GO:0005524|GO:0016021
Aip05g00103 1240 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 1236 IPR039421 -
Aip05g00103 1240 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 26 1236 - -
Aip05g00103 1240 SUPERFAMILY ABC transporter transmembrane region 658 977 IPR036640 GO:0005524|GO:0016021
Aip05g00103 1240 Gene3D - 986 1240 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00103 Aip-Chr5 1184662 1191748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00103 51 622 Calmodulin-binding Proteins AT2G36910 38.071 1.23e-107 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00103 K05658 - gmx:100819045 2169.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00103 05 1184662 1191748 Aip05g00103 05 1184662 1191748 ECH