Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00102 ATGGGAAGGTCAGCATGCTGTGATGAGAGTAGTAATGTAAAGAAAGGGCCATGGACGGCAGAAGAAGATGAGAAGCTGATTGATTACATAAAGAAACACGGTCATGGAAGTTGGAGAACACTTTCAAAGCGTGCTGGTCTCAACAGATGCGGTAAGAGCTGCAGACTCAGGTGGGCTAACTACCTTCGTCCCGATATCAAGAGAGGCAAATTCACCCCAGACGAGGAGAGAATCATCATCAACCTTCATTCTCTTCTTGGAAACAAGTGGTCAAAGATTGCAAGCCATCTTCCTGGAAGAACTGATAATGAGATAAAGAATTTCTGGAACACTCACATAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCAGACACACACAAGCCAAGGACTGATTTCAATCACCTCATCAATCTCACACACTTGCTAACAGCAGCCATGTCCTCCAATTCGGGGAATCCTATGATGAATATGAACACTCCTACTTGGGGGAGAAACCCTAATATTGCTGTACAAGGAGATGTTACTTCTCAATTAGCCCAACTACAACTGTTGCAAAATCTGTTGCAAATCATGAACGGCAACACAATTGTTAACATGGGGAATAGTAACCCTAATTATAATCCTATCTTCAATAATTCATATCTCAATGAATCAAACACACTCCAAGCTGTTGGATTGAAAAGTGAAGGACATACAAACAACCCTGCCGCCCTATTCTCTCATCAACACGGTGGTGGTGCAGTTAATAACACGCAAGAGATTTCATCACAAGGAAATGAAGAAGAAAATCCATTGTTTCCAGCATTAGTAGCATCCTCTCCAGTAGTCAGTGATGGAACCTGCAGCAGCTTCAACCAGATGGAGAATAATAATAGTAGCTGTTGCAACACAGCTCCAACATCCACAACACAGTCACCCAATAATTCCAACACAATCTTTGATGATTTAGAGATGCTCCTTCAGGATGATCAAACATCTGATTCCTACTGGAAAGATATTCTAAACTTCACATCTACATATACATCTGCATCAACAAATTCATGGTAG 1050 0.4162 MGRSACCDESSNVKKGPWTAEEDEKLIDYIKKHGHGSWRTLSKRAGLNRCGKSCRLRWANYLRPDIKRGKFTPDEERIIINLHSLLGNKWSKIASHLPGRTDNEIKNFWNTHIRKKLLQMGIDPDTHKPRTDFNHLINLTHLLTAAMSSNSGNPMMNMNTPTWGRNPNIAVQGDVTSQLAQLQLLQNLLQIMNGNTIVNMGNSNPNYNPIFNNSYLNESNTLQAVGLKSEGHTNNPAALFSHQHGGGAVNNTQEISSQGNEEENPLFPALVASSPVVSDGTCSSFNQMENNNSSCCNTAPTSTTQSPNNSNTIFDDLEMLLQDDQTSDSYWKDILNFTSTYTSASTNSW 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00102 349 SMART sant 14 64 IPR001005 -
Aip05g00102 349 SMART sant 67 115 IPR001005 -
Aip05g00102 349 PANTHER MYB TRANSCRIPTION FACTOR 1 337 - -
Aip05g00102 349 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aip05g00102 349 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Aip05g00102 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip05g00102 349 Gene3D - 70 117 - -
Aip05g00102 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 337 - -
Aip05g00102 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Aip05g00102 349 Gene3D - 14 67 - -
Aip05g00102 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip05g00102 349 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aip05g00102 349 CDD SANT 70 113 IPR001005 -
Aip05g00102 349 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aip05g00102 349 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00102 Aip-Chr5 1171622 1174040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00102 1 335 MYB Transcription Factor Family AT5G16770 46.260 1.38e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g00102 Myb_DNA-binding 1.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00102 K09422 - gmx:100810159 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00102 05 1171622 1174040 Aip05g00102 05 1171622 1174040 ECH