Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00101 ATGGGAAGGTCAGCATGCTGTGATGAGAGTAGTAATGTAAAGAAAGGGCCATGGACGGCAGAAGAAGATGAGAAGCTGATTGATTACATAAAGAAACACGGTCATGGAAGTTGGAGAACACTTTCAAAGCGTGCTGGTCTCAACAGATGCGGTAAGAGCTGCAGACTCAGGTGGGCTAACTACCTTCGTCCCGATATCAAGAGAGGCAAATTCACTCCAGACGAGGAGAGGATCATCATCAACCTTCATTCTCTTCTTGGAAACAAGTGGTCAAAGATTGCAAGCCATCTTCCTGGAAGAACTGATAATGAGATAAAGAATTTCTGGAACACTCACATCAGGAAGAAGCTTCTGCAGATGGGCATTGATCCAGAGACACACAAGCCAAGGACTGATTTCAAACACCTCATCAATCTCACACAGTTGCTTGCAGCAGGCATGTCCTCCAATTCGGGGAATCCTATGATGAATATGAACACTCCTACTTGGGGGAGAAACCCTAATATTGCTCTACAAGGAGATGCTACTTCTCAATTAGCCCAACTACAACTGTTGCAAAATCTGTTGCAAATCATGAACGGCAACACATTTCTTAACATGGGGAATAACCCTAATTTTCCCTTAGGAAACCCCAGCTTCAATAATTTTTATCCTAACGGGTCAAACATCCTTCAAACTGTAGAACCTTTTGGCTTGAAAAGTGAAGAATATGGATCAAAATCAAACCCTACTGGTCTATTATTATCTCCATCAGACTACAGTAATGACTTCTTTCAACATGGATTGTCAACAAATACACAAGAGCTTGAATGCTATAACAAACTCAGCAACACTACTAATCAAGCAGAGATTAATCCACTGTTTCCTGCATTAGTAGCATCCTCTCCAGTAATTACTGATGGAACCTGCAGCAGCTTCAACCAGATGGAGAATAACAATAGTAGCTGTTGCAACACAGCTCCAACATCCACAGCACAGTCACCTAATAATAATTCCAACACAATCTTTGATGATTTGGAGAAGCTCCTTCAGGATGATGAAACATCTGCCTCCTACTGGAAAGATATTCTAGACTTGACATCAATATGTGCCTCAGAGAATTCGTGGTAG 1110 0.418 MGRSACCDESSNVKKGPWTAEEDEKLIDYIKKHGHGSWRTLSKRAGLNRCGKSCRLRWANYLRPDIKRGKFTPDEERIIINLHSLLGNKWSKIASHLPGRTDNEIKNFWNTHIRKKLLQMGIDPETHKPRTDFKHLINLTQLLAAGMSSNSGNPMMNMNTPTWGRNPNIALQGDATSQLAQLQLLQNLLQIMNGNTFLNMGNNPNFPLGNPSFNNFYPNGSNILQTVEPFGLKSEEYGSKSNPTGLLLSPSDYSNDFFQHGLSTNTQELECYNKLSNTTNQAEINPLFPALVASSPVITDGTCSSFNQMENNNSSCCNTAPTSTAQSPNNNSNTIFDDLEKLLQDDETSASYWKDILDLTSICASENSW 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00101 369 SMART sant 14 64 IPR001005 -
Aip05g00101 369 SMART sant 67 115 IPR001005 -
Aip05g00101 369 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Aip05g00101 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip05g00101 369 Gene3D - 14 67 - -
Aip05g00101 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Aip05g00101 369 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aip05g00101 369 PANTHER MYB TRANSCRIPTION FACTOR 1 360 - -
Aip05g00101 369 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Aip05g00101 369 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Aip05g00101 369 Gene3D - 70 117 - -
Aip05g00101 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 360 - -
Aip05g00101 369 CDD SANT 70 113 IPR001005 -
Aip05g00101 369 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Aip05g00101 369 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00101 Aip-Chr5 1166054 1167775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00101 1 358 MYB Transcription Factor Family AT5G16770 44.149 1.28e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g00101 Myb_DNA-binding 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00101 K09422 - gmx:100810159 388.267