Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00098 ATGGGCAAAAAGAAACCAAAGGACCCTCCACAAACCGACTTAGCTTCGCCCCATGCCGCCGCCGGCATTTTCTCCTCGCTCTTTGCCGACGCACCGGAAGCAAGCACCGCCCTCGCTTCCTTATTCTCCGACGACAACCCCTTTCGGAGAAAGCCCACTCAACCTTCTCAGGAATCAAACGAACAAACTCGAATCCCTAACAATGTCGGATCCGCACAACACGACACCGGCGAGGAGAAGAGGAAAAGGAAAACCTTAGAGGAGAATCCCTCCGCCGATTCCGCAATCGAAGCTTCTGGGAAGAAGAGGAAGTACCACGAGTCAATTGAAGAGGCCAAAGGCTCTGACTTGGCAATTGAAAAGAACGATGCGGGGAAGGAGAAGAAGAAGAAGAAGAAGAGGAAAAGAGAGGAGCTTGAGAAGGAGTGGGAGGAGAGGAAGTACGGTGCGGTGGTGGATGAAGAAAAAGAAGCGTCTTTGTTGGAGAACGGAAAAGTTGGGAACAAGAGGAAGTTGCTGCATGACCCTGCTGATATGATGGTATCGAAGGAAGGGTTTGATGATGAGGAGAAGCTCTTGAGAACGGTATTCGTTGGAAATTTGCCTCTCAAGGTGAAGAAGAAGACCCTGCTCAAAGAGTTCAAGAAGTTCGGTGAGGTTGAATCCGTGAGGATTCGTTCTGTTCCGATACAAGACACTAAAAAGCCTAGGAAGGGTGCTATCCTTGCGAAGAAAATCAATGATGCTGCTGATAGTGTTCATGCCTACATTGTTTTCAAAACGGAAGAATCTGCTCAGGCATCTTTGTCCCACAACATGGCAGTGGTTGAAGGGAATCATATTCGTGTTGATAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGAGATTACTCCACTTTATGATAACAAGAGAACTTTGTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAACTATATCAGTTATTTTGTAGCATACCTAACCTGGGAACCAGTGTAGAAGCTGTAAGAGTTGTTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTCTGCACTCAAGAAACGGAACTTGGAGCTTCGAGACCGAGAATTACGACTCAGTCATGCCAAGGCTGATTCCACTCCATCGAAAAAGCCAAAGCCAAAGCCATCACCAGCACAAGCTCCTGGCACCCCAGCCAAGAGAAAGTCTCTGGCTACAACGTCTCCTTCAAGCAGCATCAACAGGTCAAACAAAAAATCCAATGCATCTTACCAGGGTCTGCGTGCAACAAAATCTGATTTCAAGAAGAAAGCTCATGGAGTAGAAAAATCAAAAGGACACTCGGGGAAACGACCATCAGTTGCTGCCAGAAAAGCCAAAGCCAAAATGCTCAAAGAAAGTGGTTCATCAAAACAAGCTGGGATGAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCTTCAGAAGTAAGAAGGTGAAGAAGAATAGGTAG 1521 0.4668 MGKKKPKDPPQTDLASPHAAAGIFSSLFADAPEASTALASLFSDDNPFRRKPTQPSQESNEQTRIPNNVGSAQHDTGEEKRKRKTLEENPSADSAIEASGKKRKYHESIEEAKGSDLAIEKNDAGKEKKKKKKRKREELEKEWEERKYGAVVDEEKEASLLENGKVGNKRKLLHDPADMMVSKEGFDDEEKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKLKGEITPLYDNKRTLFVGNLPFDVKDEELYQLFCSIPNLGTSVEAVRVVRDPHLNVGKGIAYVLFKTKEAANSALKKRNLELRDRELRLSHAKADSTPSKKPKPKPSPAQAPGTPAKRKSLATTSPSSSINRSNKKSNASYQGLRATKSDFKKKAHGVEKSKGHSGKRPSVAARKAKAKMLKESGSSKQAGMKRKLDSRTPDSSFRSKKVKKNR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00098 506 PANTHER RNA-BINDING PROTEIN 34 43 504 - -
Aip05g00098 506 MobiDBLite consensus disorder prediction 97 126 - -
Aip05g00098 506 MobiDBLite consensus disorder prediction 40 73 - -
Aip05g00098 506 MobiDBLite consensus disorder prediction 468 500 - -
Aip05g00098 506 MobiDBLite consensus disorder prediction 439 458 - -
Aip05g00098 506 MobiDBLite consensus disorder prediction 382 506 - -
Aip05g00098 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 288 IPR000504 GO:0003723
Aip05g00098 506 SUPERFAMILY RNA-binding domain, RBD 301 395 IPR035979 GO:0003676
Aip05g00098 506 MobiDBLite consensus disorder prediction 409 437 - -
Aip05g00098 506 MobiDBLite consensus disorder prediction 40 140 - -
Aip05g00098 506 MobiDBLite consensus disorder prediction 74 90 - -
Aip05g00098 506 SUPERFAMILY RNA-binding domain, RBD 186 294 IPR035979 GO:0003676
Aip05g00098 506 Coils Coil 122 146 - -
Aip05g00098 506 CDD RRM1_RBM34 194 284 IPR034220 -
Aip05g00098 506 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 386 IPR000504 GO:0003723
Aip05g00098 506 SMART rrm1_1 195 284 IPR000504 GO:0003723
Aip05g00098 506 SMART rrm1_1 306 382 IPR000504 GO:0003723
Aip05g00098 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 238 IPR000504 GO:0003723
Aip05g00098 506 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 379 IPR000504 GO:0003723
Aip05g00098 506 CDD RRM2_RBM34 306 382 IPR034221 -
Aip05g00098 506 Gene3D - 300 394 IPR012677 -
Aip05g00098 506 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 43 504 - -
Aip05g00098 506 Gene3D - 189 293 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00098 Aip-Chr5 1123162 1126973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00098 196 385 Eukaryotic Initiation Factors Gene Family AT1G22760 26.768 1.24e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00098 K14837 - gmx:100809622 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00098 05 1123162 1126973 Aip05g00098 05 1123162 1126973 ECH