Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00095 ATGGATTACAGCCGAGACGGCGACGTCGTTCAAATCATCGCCGGCGCCGCTAATGACCCTTCCGTCTGGGCAACCGAAGAGGACTACAAATTCTGGAACAACGACGGTGACAGCACGCCTTCCAATTCCGGCGGAGGAAGCGGGTACGACCAGAGGAAGAAGGCAAGAAGCTCTCAGGACAACAACGCAACGACGTCGTCGAGCAACAACAATAGCAACAGGGCGAAGGCCATAGGGAAGATGTTCTTCAAGACCAAACTGTGCTGCAAGTTCCGTGCCGGAACCTGCCCTTACGTCACCAACTGCAACTTCGCCCACTCCGTCGAAGAGCTCCGCCGCCCTCCACCCAACTGGCAGGAGATCGTCGCGGCTCACGAGGAGGAGAGGGCCAACGCTGGCTCCGACACTGTTGTTCCCGCCAGGGAGGAGTTCCAGATTCCCATTTTGGGGTCTTCCAATTACTCCGGCGAGTCGCAGCGGTCTTACAAGGGTAGGCATTGCAAGAAGTTCTATACAGAAGAAGGGTGTCCCTATGGGGATAGTTGCACTTTTCTTCATGATGAGCAATCCAAGTATAGAGAGAGTGTGGCTATAAGCTTGGGCCCTGGTGGCTATGGTGGTGGAGGGGGTGGTGCCGGTGGAGGAGGGGGTGGTGGAGGTACTGGAAGTGGCGGTGGTGCCAGTGCTGGTGCTGCTGCTGGTGCTGGTGGAGGTGGGAATGGGAATGGGCCTAATTCGAAGCCTTCGAATTGGAAGACGAGGATTTGTAACAAGTGGGAGATGACAGGGTATTGTCCCTTCGGAAACAAGTGCCATTTTGCTCATGGTGCAGCAGAATTGCATCGGTATGGAGGTGGGCTTGTAGAGGGAGAAAGTAGAGACCCTGCTTCTGCTGCTGCTCCCGACGCGAAGCAGGGAGGCGTACCTTCAAAATCTCCTGCTGATAATGTGGTTGCATCAGTTACCCCGGTTGCGCATTCGGATTCGATGTATCACATGGGAGTTCCTTCACAAAGGCCTACGATTGTGCTTCAGAGGCCTGGACAGAGAGCGCACCAGAAGTGGAAAGGTCCTGATAAAATCAGTAGAATATATGGTGATTGGATTGACGACATTGAATAG 1122 0.5437 MDYSRDGDVVQIIAGAANDPSVWATEEDYKFWNNDGDSTPSNSGGGSGYDQRKKARSSQDNNATTSSSNNNSNRAKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSVEELRRPPPNWQEIVAAHEEERANAGSDTVVPAREEFQIPILGSSNYSGESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKYRESVAISLGPGGYGGGGGGAGGGGGGGGTGSGGGASAGAAAGAGGGGNGNGPNSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGLVEGESRDPASAAAPDAKQGGVPSKSPADNVVASVTPVAHSDSMYHMGVPSQRPTIVLQRPGQRAHQKWKGPDKISRIYGDWIDDIE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00095 373 Gene3D - 150 200 - -
Aip05g00095 373 MobiDBLite consensus disorder prediction 58 73 - -
Aip05g00095 373 MobiDBLite consensus disorder prediction 214 250 - -
Aip05g00095 373 ProSiteProfiles Zinc finger C3H1-type profile. 82 109 IPR000571 GO:0046872
Aip05g00095 373 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Aip05g00095 373 SMART c3hfinal6 250 277 IPR000571 GO:0046872
Aip05g00095 373 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Aip05g00095 373 SMART c3hfinal6 82 108 IPR000571 GO:0046872
Aip05g00095 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 251 276 IPR000571 GO:0046872
Aip05g00095 373 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 107 IPR000571 GO:0046872
Aip05g00095 373 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Aip05g00095 373 SUPERFAMILY CCCH zinc finger 248 281 IPR036855 GO:0046872
Aip05g00095 373 Gene3D - 244 282 - -
Aip05g00095 373 Gene3D - 79 113 - -
Aip05g00095 373 MobiDBLite consensus disorder prediction 31 73 - -
Aip05g00095 373 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Aip05g00095 373 MobiDBLite consensus disorder prediction 291 316 - -
Aip05g00095 373 ProSiteProfiles Zinc finger C3H1-type profile. 250 278 IPR000571 GO:0046872
Aip05g00095 373 SUPERFAMILY CCCH zinc finger 80 113 IPR036855 GO:0046872
Aip05g00095 373 MobiDBLite consensus disorder prediction 34 48 - -
Aip05g00095 373 PANTHER CCCH ZINC FINGER/TIS11-RELATED 238 370 IPR045877 GO:0003729
Aip05g00095 373 PANTHER CCCH ZINC FINGER/TIS11-RELATED 18 206 IPR045877 GO:0003729
Aip05g00095 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 238 370 - -
Aip05g00095 373 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 18 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00095 Aip-Chr5 1090618 1093197 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00095 252 280 C3H Transcription Factor Family AT1G68200 62.069 2.61e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip05g00095 zf-CCCH 1.2e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00095 - - adu:107487192 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00095 05 1090618 1093197 Aip05g00095 05 1090618 1093197 ECH