Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00094 ATGTCGTCTTCTTCGTCTTCACCATCATCAGAATCAGATCACAGAGGAGGAACAGCAGCATCAACAGCATACAACACACCACCAATACTCGTAGCTCTCGTCCTCATCGTCCTCGTCATCTGCTTCGTCTGCTTCACCCTCCTCTACTTCTGCCGCTGCTACTTCGTCAGCATCATCCACACCCTCGCCTTCCACCGCTCCCCCTCTGCCAACGCAGCCACCACCACCACCGCCTCCGCCACCGCCAACACCATCAACAACGCTCCTAATTCCCCCTTCATGGGCCTCGACGCTTCCCTCCTCCACGAATTCCCCACCTTCCCTTATTCCTCCGTCAAGGATCTCCGCAAGGAGAAGAAGTACGCCCTTGAATGCGCCATCTGTCTCTTGGAGTTCGAGGACGACACCGTTCTCCGCTTGCTCACCGTTTGCCGCCACGTGTTCCACCAAGAGTGCGTTGATCTCTGGCTTCAACGACACAAGACCTGCCCCGTTTGCCGCACTGATCTTGAAACCAGAAAGTCTTCTGCTTCTTCGATTACTCACGATCACGACAGGCAGAGTGCTGCTGTTGGAGACGACGGTAATGGTGATGATGACGTCTGCATTGACGTCAAAGAAGGCGACGACGACGGTATTAACAGATTCTTGCGGTCGCATTCGACGGGGCATTCAATAGTTATGGTTAGAGAAGAAGGAAGAAACGACGAAGATGATGATAGGTATAGGTTGAGGTTGCAGGAGGATGCAGAGTTGAGAGTTGTTAACAATGATATGAAGAAGAAGAAGAATCACCAATACTCGAGAAGCTGCGAGAGTTACAAGGAGATGATGATGATGATGGCGGCGGCTAAGCCCCTTGTTCCGCCTTGTACTAACTGTGGTTATGTTGATCATCACACTCTCTCCGCTCCTTCTTCTTCTTCGCGTGTTGGTGCTAACTGA 945 0.5185 MSSSSSSPSSESDHRGGTAASTAYNTPPILVALVLIVLVICFVCFTLLYFCRCYFVSIIHTLAFHRSPSANAATTTTASATANTINNAPNSPFMGLDASLLHEFPTFPYSSVKDLRKEKKYALECAICLLEFEDDTVLRLLTVCRHVFHQECVDLWLQRHKTCPVCRTDLETRKSSASSITHDHDRQSAAVGDDGNGDDDVCIDVKEGDDDGINRFLRSHSTGHSIVMVREEGRNDEDDDRYRLRLQEDAELRVVNNDMKKKKNHQYSRSCESYKEMMMMMAAAKPLVPPCTNCGYVDHHTLSAPSSSSRVGAN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00094 314 Pfam Ring finger domain 124 167 IPR001841 -
Aip05g00094 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 173 IPR013083 -
Aip05g00094 314 MobiDBLite consensus disorder prediction 177 196 - -
Aip05g00094 314 SUPERFAMILY RING/U-box 109 173 - -
Aip05g00094 314 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Aip05g00094 314 SMART ring_2 125 166 IPR001841 -
Aip05g00094 314 PANTHER RING FINGER DOMAIN-CONTAINING 19 266 - -
Aip05g00094 314 CDD RING-H2_EL5_like 124 167 - -
Aip05g00094 314 PANTHER RING-H2 FINGER PROTEIN ATL29 19 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00094 Aip-Chr5 1088274 1089218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00094 26 264 Rapid Response to Elicitors AT3G05200 33.716 2.83e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00094 - - ahf:112747412 556.984