Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00093 ATGGCCTTATTAGAAGATCATCATCTTTCATCATCAAATGATTTTTCCAACTTCGTTGTGTATGATACTATTTCTGCAACCCCTTTTAGCAGCCATGGAAGTTCATCTACTTCTTTCTTGGTAGAAGAAAACAAGGTTGAAGAGTATGGAGAGAGGACAACAACAACAACACGAAAACGGCAATCGGGTGAAGCTGGGCAAGGGAAGAAGAAGAGAAGGAGAAAGCCAAGGGTATGCAAGAACAAGGAAGAAGCTGAGAATCAAAGAATGATCCACATTACTGTTGAAAGGAACAGAAGGAAGCTGATGAATGAGCATCTTGCTGTTCTTCGCTCACTCATGCCTGAATCCTATGTCCAAAGGGGTGATCAAGCATCAATAGTAGGTGGAGCTATAGAATTTGTGAAGGAGCTAGAGCAGCTGTTGCAGTGTCTTGAGGCTCAAAAGTTGAAGCTTGTACATCAAGGAATGGCAGCACAACAATCCAACAAGAATAACAATGAAGATGCTTCTTCTTCTTCCAATGAGTTGATGATGATGATGATGATGGTGATGGGATCAGCCCCTTTTTCCCATTTCTTTGTGCATCCTCAGTTCACTTGGTCTCAGGCTCCAAACAAATATGCTTCCCACCACAACAAGACTAACAATAATAATAATAATCAAGCAGCCATGGCTGACATTGAGGTTACTTTGATTGAAACCCATGCAAACCTCAGAATCCTCTCAAGGAAAAGCCCCAAGCAACTTTCAAAGTTGCTTTCTGGTTTTCAGAATCTCTCTCTCACCATTTTGCATCTCAATGTCACCTCCATGGACCCCTTAGTACTCTATTCCATTAGCGCCAAGGTTGAAGAAGAATGCCAACTTGGTTCTGTAGATGACATTGCAAGTGCAGTTCACAACTTGCTTAAAATGATTGAAGAAGAAGATTCCCTTTGCAGTTTATACGTGCTGAATGGATGTATTGTCCTACATTGCCTTAACACTAATAAGTACTTCACTTAG 1008 0.4117 MALLEDHHLSSSNDFSNFVVYDTISATPFSSHGSSSTSFLVEENKVEEYGERTTTTTRKRQSGEAGQGKKKRRRKPRVCKNKEEAENQRMIHITVERNRRKLMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEQLLQCLEAQKLKLVHQGMAAQQSNKNNNEDASSSSNELMMMMMMVMGSAPFSHFFVHPQFTWSQAPNKYASHHNKTNNNNNNQAAMADIEVTLIETHANLRILSRKSPKQLSKLLSGFQNLSLTILHLNVTSMDPLVLYSISAKVEEECQLGSVDDIASAVHNLLKMIEEEDSLCSLYVLNGCIVLHCLNTNKYFT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00093 335 MobiDBLite consensus disorder prediction 48 85 - -
Aip05g00093 335 CDD bHLH_AtFAMA_like 90 149 - -
Aip05g00093 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 87 138 IPR011598 GO:0046983
Aip05g00093 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 157 IPR036638 GO:0046983
Aip05g00093 335 PANTHER MAX DIMERIZATION, MAD 15 314 - -
Aip05g00093 335 PANTHER TRANSCRIPTION FACTOR BHLH71 15 314 - -
Aip05g00093 335 Gene3D - 79 155 IPR036638 GO:0046983
Aip05g00093 335 Coils Coil 135 155 - -
Aip05g00093 335 Pfam Helix-loop-helix DNA-binding domain 88 139 IPR011598 GO:0046983
Aip05g00093 335 SMART finulus 93 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00093 Aip-Chr5 1081223 1082773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00093 49 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 48.729 2.88e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00093 HLH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00093 - - aip:107642328 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00093 05 1081223 1082773 Aip05g00093 05 1081223 1082773 ECH