Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00091 ATGGCAGCAACATTAGAATCAGCACTCTCCATATTCGCATCTCACTCTCACCGTTTCTCCAACAACAACACTCGTCTCTCTCCAAACCTCTCTTCTCTCTCCTTCTCTTTCAATGCCTCCACACCAAGATCATTCTCCTTCCTCTGCTCCACATTGCAAGAAGCACAACCACACACACCTACAACTCAGGAACAACCCAAGAACGTCAAGAAGAAGCTCTATGTCTTCAACTTACCTTGGTCTATGTCCGTTGCTGACATCAAAGACCTGTTTGGCCAATGCGGGACTGTAACAGACGTCGAGATCATAAAGAACAAACAAGGCAAGAGCAGGGGTTTTGCCTTCGTTACTATGGCTTCAGGGGAAGAGGCTCTTGCTGTCGTTCACAAGTTCAATTCTCATCAAATATCAGGAAGGGAAATAAGGATAGAGCTTGCCAAGAGATTCAAGAAGCCGCCGCCTCCTCCTCCACCGTCTCCGAGTCCCCCTGCCAGCGAGACACGTCACGTGGTATATGTAGCCAACCTTGCATGGAAAGTAAGATCACCCGTTCTCAGACAATTCTTCACTGATAATTTCAAAACCCCAGTTTCGTCCAGGGTTGTCTTTGACAGCCCTGCCGGAAGATCTGCAGGGTATGGATTTGTTTCTTTCCTCACAAAAGAGGATGCAGAGGCTGCAATTTCTGCTTTGGATGGGAAGGAATTAATGGAGCGACCACTTCGTCTTAAGTTGAGTGAAAAGAAAGTCAAAGCAGCTCCAACTGAAAGGGATGAAGACCAAGCTCCTGAATTGGATCAAGAGAAGCTCAAAGAAGCTGAAACTGAAAAGGAGGAAATCCATGATTCTGATGCTCAGCTGGAACAATCATAA 873 0.4651 MAATLESALSIFASHSHRFSNNNTRLSPNLSSLSFSFNASTPRSFSFLCSTLQEAQPHTPTTQEQPKNVKKKLYVFNLPWSMSVADIKDLFGQCGTVTDVEIIKNKQGKSRGFAFVTMASGEEALAVVHKFNSHQISGREIRIELAKRFKKPPPPPPPSPSPPASETRHVVYVANLAWKVRSPVLRQFFTDNFKTPVSSRVVFDSPAGRSAGYGFVSFLTKEDAEAAISALDGKELMERPLRLKLSEKKVKAAPTERDEDQAPELDQEKLKEAETEKEEIHDSDAQLEQS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00091 290 Coils Coil 270 290 - -
Aip05g00091 290 Gene3D - 152 259 IPR012677 -
Aip05g00091 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 248 IPR000504 GO:0003723
Aip05g00091 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Aip05g00091 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 242 IPR000504 GO:0003723
Aip05g00091 290 SMART rrm1_1 170 244 IPR000504 GO:0003723
Aip05g00091 290 SMART rrm1_1 72 144 IPR000504 GO:0003723
Aip05g00091 290 MobiDBLite consensus disorder prediction 244 290 - -
Aip05g00091 290 Gene3D - 50 151 IPR012677 -
Aip05g00091 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Aip05g00091 290 SUPERFAMILY RNA-binding domain, RBD 55 154 IPR035979 GO:0003676
Aip05g00091 290 SUPERFAMILY RNA-binding domain, RBD 152 252 IPR035979 GO:0003676
Aip05g00091 290 PANTHER OS02G0815200 PROTEIN 26 266 - -
Aip05g00091 290 PANTHER CHLOROPLAST, PUTATIVE-RELATED 26 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00091 Aip-Chr5 1067957 1070673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00091 73 273 Eukaryotic Initiation Factors Gene Family AT4G34110 25.616 7.94e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00091 - - gmx:100793319 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00091 05 1067957 1070673 Aip05g00091 05 1067957 1070673 ECH