Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00080 ATGAACCTCTGGACAGACGACAACTCCTCCGTTATGGAGGCCTTCATGACCTCCTCCGACCTCTCTTCCCTCTGGCCTCCGCCACCTCCTCCCCCTCAATCCGCCTCCTCTGCCGCCGTATTTAATCAGGACACCCTCCAGCAGCGCCTCCAGGCTCTCATCGAAGGGGCTAGGGAGAGCTGGACATATGCTATTTTCTGGCAGTCTTCCTATGACTACCCCTCCTCCGCCTCCACCGCCGTCCTCGGCTGGGGCGACGGCTATTACAAGGGTGATGAAGACAAGGGAAAGGCCAAATCCACCAAAACCACCACCCCCGCCGAGCAGGATCACCGTAAAAAGGTCCTCCGCGAGCTCAATTCCCTGATTTCCGGCTCCGCCGCCGCCCCCTCCGACGATGTCGAAGAGGAAGTCACCGACACCGAGTGGTTCTTCCTAGTCTCCATGACGCAGTCCTTTGTAAGCGGGACGGGGCTCCCCGGCCAGGCCTTCTACCACTCGAGCCCGGTCTGGCTCACAGGCCCGGACAGACTCGCCGGTTCGTCGTGCGAGCGGGCCAGACAAGGCCAGGTATTCGGGCTCCAAACCCTGGTTTGCATACCTTCCTCAAACGGGGTGGTTGAGCTTGGCTCCACGGAGATGATATTCCAAAATCCCGATCTGATGAACAAGGTTAGGATTCTCTTCAATTTCAATAGCAACAGCATCGACGTGGGCTCATCGTGGCCGTTAACCGGCAGCACAACCACCACAGCCGCAGATCAAGGTGAGAACGATCCTTCTTCATTATGGCTTAACGACTCTGAAATTAGGGATTCTGTTACCACCGTTACTACCGTCACAACGACCACTCCTGCCTCGGTTATTTCCGTTAACCCTGCTTCGAGCGCCTTGGCAGAAACCCCAAGCTCCGTTCACTTGCCGAATAATAACAACAACACGCACGCTGGTGGCGCGTCTCAATCGCAGAACCGGAGCTTCTTCTCAAGGGAGTTGAACTTTTCGGAGTTTGGATTTGACGGTAGTAACGCCGTCAAAACGGGGAACGGTCAGCATCACTCGCTCAAGCCGGAATCTGGTGAGATTCTGAGCTTCGGCGAGAGCAAGAGGAGCTCCTACGGCGGAGGTGTAGGCGGAGGCGGAGGAGGTGGAAACGCGAACTTCTTCTCCGGCCAGTCGCAGTTCGTTGCCGCAGCCGAGGACAACAACGGGAAAAAGAGGAAGTCGCCGAATTCGAGAGGAAGCAACAACGACGACGGCATGCTCTCGTTCACATCCGCTGTGATTCTTCCGCCGTCGAACATGAAATCCAGTGGCGGAGGCGGTGATTCCGACCACTCAGACCTGGAGGCCTCGGTGGTGAAGGAGAACGAAAGCAGCAGAGTGGTGGAGCCGGAGAAGCGGCCAAGAAAAAGAGGGCGGAAGCCGGCGAATGGCAGAGAGGAACCGTTGAACCACGTGGAAGCGGAGAGGCAGAGAAGGGAGAAGCTCAACCAGCGATTCTACGCCCTCCGTGCCGTAGTTCCAAACGTTTCAAAGATGGACAAAGCTTCACTCCTTGGCGACGCCATTTCCTACATCACAGAGCTCAAGTCAAAGCTTCAAACCCTCGAATCAGACAAAGATGGCTTAGAGAAGCAGCTTGATTCACTGAAGAAGGATCTTGATAAGGTCAAAAAGGAAGCTTCTTCAGCTCCTCCTCCTCCTCTTCCAGACAAGGAACTAAGGATGTCCTCCAACAACCTTGTAGGTGGTGGGAAGCTTATTGATTTGGATATAGACGTGAAGATAATTGGCTGGGATGCAATGATAAGAATCCAATGCAGCAAGAAGAACCACCCTGCCGCGAGATTGATGGCGGCCCTGATGGAGCTGGACTTGGACGTCCACCACGCCAGCGTGTCTGTGGTGAATGATTTGATGATACAACAGGCGACAGTGAAGATGGGTAGCCGGTTTTACACGCAGGAGCAGCTCCGGTCGGCGCTAACATCCAAAGTTGGTGGTGATGCCTTCCCGGTAGCAATCTCTCTTGCTTATCAGTTCTGTGATTCATTGCTGGTTTCATTGTGCACTATGCAACCTTTTTGA 2091 0.5481 MNLWTDDNSSVMEAFMTSSDLSSLWPPPPPPPQSASSAAVFNQDTLQQRLQALIEGARESWTYAIFWQSSYDYPSSASTAVLGWGDGYYKGDEDKGKAKSTKTTTPAEQDHRKKVLRELNSLISGSAAAPSDDVEEEVTDTEWFFLVSMTQSFVSGTGLPGQAFYHSSPVWLTGPDRLAGSSCERARQGQVFGLQTLVCIPSSNGVVELGSTEMIFQNPDLMNKVRILFNFNSNSIDVGSSWPLTGSTTTTAADQGENDPSSLWLNDSEIRDSVTTVTTVTTTTPASVISVNPASSALAETPSSVHLPNNNNNTHAGGASQSQNRSFFSRELNFSEFGFDGSNAVKTGNGQHHSLKPESGEILSFGESKRSSYGGGVGGGGGGGNANFFSGQSQFVAAAEDNNGKKRKSPNSRGSNNDDGMLSFTSAVILPPSNMKSSGGGGDSDHSDLEASVVKENESSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQTLESDKDGLEKQLDSLKKDLDKVKKEASSAPPPPLPDKELRMSSNNLVGGGKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRSALTSKVGGDAFPVAISLAYQFCDSLLVSLCTMQPF 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00080 696 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 46 229 IPR025610 -
Aip05g00080 696 Gene3D - 473 563 IPR036638 GO:0046983
Aip05g00080 696 PANTHER MYC 34 668 IPR045084 GO:0003700|GO:0006355
Aip05g00080 696 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 481 530 IPR011598 GO:0046983
Aip05g00080 696 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 484 550 IPR036638 GO:0046983
Aip05g00080 696 PANTHER TRANSCRIPTION FACTOR MYC2 34 668 - -
Aip05g00080 696 MobiDBLite consensus disorder prediction 400 491 - -
Aip05g00080 696 SMART finulus 487 536 IPR011598 GO:0046983
Aip05g00080 696 Coils Coil 527 561 - -
Aip05g00080 696 MobiDBLite consensus disorder prediction 556 577 - -
Aip05g00080 696 Pfam Helix-loop-helix DNA-binding domain 485 530 IPR011598 GO:0046983
Aip05g00080 696 MobiDBLite consensus disorder prediction 300 324 - -
Aip05g00080 696 MobiDBLite consensus disorder prediction 414 441 - -
Aip05g00080 696 MobiDBLite consensus disorder prediction 448 491 - -
Aip05g00080 696 CDD bHLH_AtAIB_like 478 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00080 Aip-Chr5 926851 929537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00080 1 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.125 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00080 bHLH-MYC_N 2e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00080 K13422 - gmx:100776289 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00080 05 926851 929537 Aip05g00080 05 926851 929537 ECH