Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00070 ATGTCTCCGCGGGCGCTGGCGCTGGTTTCAGAGGACGAAGGGCAGAGCAAAGTCTCCACGGTAGCTTCTGCATCTTCACAATCCCTGGACTGTTTCTCCCAAAGTGGGGGTGGAGGATTGAAAGAGCGAAATTACCTTGGGTTGTCTGATTGCTCATCAGTGGACAGCTCCAGTTCTGCTGTACCAAGCTTGTCTGATGAGAAGAAGGGCAACCTGAATTTGAAGGCTACTGAATTGAGGCTGGGACTCCCTGGATCCCAGTCGCCTGAAAGGGATCCGGACGTAGATGTGTTCTCTTTGAGCTCATCGAAGCCCGATGAGAAGCCGTTGTTCCCTTTGCTTCCTATGAAAGATGGTATCTGCTCGTCGTCCCAGAAGAATGTTGCTGTGTTGGGAAACAAAAGGGGTTTTGCTGATACCATAGATGGATTTTCTCAGGGGAAGTTTGCTGGTAATACAGCAATAAGTGCAATGTTATCACCTAGATCTTCTGGTCTACAGCCTACGGTGACGAATGAAATGCCAAAGGTGTTACAAGAACAGCCATGTGCAGCTAATGGAACTGGTCTAAATAGCCAAACGGGTCCTTCTGCCAGTGCCAGTGCCAGTGCCAGTGCCCCAGCTTCTAAGGCGCAGGTCGTTGGTTGGCCTCCTATAAGATCATTTAGGAGAAATTCAATGGCAACCGCATCAAAGAACAATGATGAAGTGGATGGAAAACCTGGTTTGGCCGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTCAGGAAGGTGGATCTCAGAAGTTATGCATCCTATCAAGAACTATCTTCTGCCCTTGAGAAGATGTTCACTTGTTTTACCCTAGGTCAGTGTGGCTCCCATGGATCTCCAGGAAGAGAAATGTTGAGTGAAAGCAAGCTGAGGGACCTTCTGCATGGTTCAGAGTATGTCCTCACTTACGAGGATAAAGATGGGGATTGGATGCTTGTAGGGGACGTACCTTGGGAGATGTTCATAGACACTTGCAAAAGACTGAAAATCATGAAGGGTTCTGATGCAATTGGTTTAGCTCCCAGGGCCATGGAGAAGTCCAAGAGCAGGTGTTAG 1098 0.4863 MSPRALALVSEDEGQSKVSTVASASSQSLDCFSQSGGGGLKERNYLGLSDCSSVDSSSSAVPSLSDEKKGNLNLKATELRLGLPGSQSPERDPDVDVFSLSSSKPDEKPLFPLLPMKDGICSSSQKNVAVLGNKRGFADTIDGFSQGKFAGNTAISAMLSPRSSGLQPTVTNEMPKVLQEQPCAANGTGLNSQTGPSASASASASAPASKAQVVGWPPIRSFRRNSMATASKNNDEVDGKPGLAALFVKVSMDGAPYLRKVDLRSYASYQELSSALEKMFTCFTLGQCGSHGSPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00070 365 MobiDBLite consensus disorder prediction 184 207 - -
Aip05g00070 365 MobiDBLite consensus disorder prediction 1 36 - -
Aip05g00070 365 ProSiteProfiles PB1 domain profile. 245 349 IPR000270 GO:0005515
Aip05g00070 365 Pfam AUX/IAA family 77 356 IPR033389 -
Aip05g00070 365 SUPERFAMILY CAD & PB1 domains 245 346 - -
Aip05g00070 365 MobiDBLite consensus disorder prediction 13 34 - -
Aip05g00070 365 Gene3D - 242 358 - -
Aip05g00070 365 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 358 IPR003311 GO:0005634|GO:0006355
Aip05g00070 365 PANTHER AUXIN-INDUCED PROTEIN 24 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00070 Aip-Chr5 774668 778093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00070 247 350 B3 DNA Binding Superfamily AT5G37020 33.654 3.35e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Aip05g00070 AUX_IAA 2.6e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00070 K14484 - gmx:547502 535.028