Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00067 ATGGAGCTTTCTCAACTTGGTTTTCTGGAGGAACTACTACTACTGGCTCCAAGGAGAGTAGAAGAAACATGTTGGAATAATGGTTTCAATGATCTACTCCCTACTACTCCTCCTCCTTCTGCTTCTGTTTCTGCTTCTTGGAGCTTTGACTCTCTTGATGATAACCCTTCTTTGAATCCCTCATTTTCTTCGTTCTCAACACCTTTAGACCACAGATTTGACTCTTCTTATGCTGCTTCATTTCCATTTCTTGATGCCTTCACAATCCCACCAGAGCTTCATCACTCACCACCACCACTTTTGCCACAACAAGAACACAACAACAACAACAACAACCACCCTTTGGTGGAAGAAGAAGAAGAAGAGCTTGGATTTCTTGGTAATGATGATAACAATCAGAGCTTGGAAGAGAGGAACAGCGGTAGATGCAAAGTTGAGGAACAACAAGCTCTTGAGGTGCCAGCTGTAGTGTTCAACATGGGAATGTGTGGAGAGAAAAAGGTACCAAAGTCAAAGAAACTTGAAGGGCAGCCCTCAAAGAATCTCATGGCTGAAAGGAGAAGAAGAAAGCGTTTGAATGATCGCCTTTCAATGCTGAGGTCCATAGTCCCTAAGATAAGCAAGATGGACAGGACCTCCATTCTAGGAGATACCATAGATTACATGAAAGAGCTTCTAGAAAGGATTGCTAAGTTGCAAGAGGAAACAATGGAAGAGGAGGGAAAGAATCAGATACACCTCTTGGGAATTTCAAAAGAGCTAAAGCCAAATGAAGTAATGTTCAGAAACTCCCCTAAGTTTGATGTTGAGAGGAGGGACCATGACACAAGGATCAGCATCTGCTGTGCTACAAAGCCAGGGTTGTTGCTGTCAACAGTGAACACTCTAGAAGCATTAGGCCTTGAAATTCACCAATGTGTCATAAGCGGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTCGCTGAGGAAAGAAACTGTATTAGCACAGAAGATGTTAAGCAAGCACTATTCAAAAATGCAGGCTATGGTGGAAGATGTGTCTAA 1053 0.4264 MELSQLGFLEELLLLAPRRVEETCWNNGFNDLLPTTPPPSASVSASWSFDSLDDNPSLNPSFSSFSTPLDHRFDSSYAASFPFLDAFTIPPELHHSPPPLLPQQEHNNNNNNHPLVEEEEEELGFLGNDDNNQSLEERNSGRCKVEEQQALEVPAVVFNMGMCGEKKVPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIAKLQEETMEEEGKNQIHLLGISKELKPNEVMFRNSPKFDVERRDHDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISGFNDFSMQASCSEVAEERNCISTEDVKQALFKNAGYGGRCV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00067 350 CDD ACT_UUR-ACR-like 276 317 - -
Aip05g00067 350 Pfam Helix-loop-helix DNA-binding domain 182 225 IPR011598 GO:0046983
Aip05g00067 350 MobiDBLite consensus disorder prediction 94 122 - -
Aip05g00067 350 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 350 - -
Aip05g00067 350 Coils Coil 215 242 - -
Aip05g00067 350 Gene3D - 170 243 IPR036638 GO:0046983
Aip05g00067 350 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 5 350 - -
Aip05g00067 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Aip05g00067 350 SMART finulus 182 231 IPR011598 GO:0046983
Aip05g00067 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 240 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00067 Aip-Chr5 746122 748221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00067 66 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 51.579 1.48e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00067 HLH 7.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00067 - - gmx:100806571 402.905