Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00058 ATGGAGCACGTGGGAATCAACGTTAATTCAATTTCTTCGGCAAACTACACTGCTTGGAATGCTAGCAAGCATAGTAATGACATTGCTGATGCATGGATCATACAATTCAACAAGCAAGATTCTAAGTCTTGCCTCAATCGGTTACAATTGGATTTTCCGCGGCTACAAGTTATTACACAGAACGACATGTTGTTCAATCTTGGGAGTTCAGCTCTACTCTGGACGCAGAGCCTAGTCATGGAAAGAGTTCAAAAAAGACTTGGAAGATGGTGGTTGCATCGtCTGTTAGAGAGGGTGAGCTCTATTATTGATGATTTTGAAAGAGGAGCTGGACCAAGAAGGTACAGGAAGTTAGGCCAAGGTGGATTTGGAGCAGTGTATAGAGGCTACTTTGCTGATCTAGATTTGGTTGTTGCTGTTAAGAAGATATCAAGTGGATCAAGACAAGGGAGAAGAGAGTATGTAACTGAAGTCAAAGTCATTAGCAGGTTAAGGCATCGGAATCTTGTGCAACTCATAGGTTGGTGCCATGATCAAGGTGAGTTCCTTCTTGTTTATGAGTATATGCCAAATGGTAGTCTTGATTCCCATTTGTTTGGGAATAGGACTCCACTATCTTGGAACTTGAGGCACAAGATAGCTCTTGGATTGGCCTCTGCTATTCTCTATCTTCATGAAGAATGGGAACAATGTGTTATTCACAGAGATATCAAACCAAGCAATGTGATGTTGGATTCTAGTTTCAATGTCAAGCTTGGTGATTTCGGCTTGGCTAAGCTCATAGATCATGAGTTAGGGTCTCAGACATCGGCTTTAGCCGGAACTATTGGCTACATGGCTCCAGAATATATAAGCAGTCGTAGGATAAGAAACCCTAGGTTATTGAAAATGGGAAGAGGGAAGATTGTGATTCGGAGGATCGATAATTCGACGAGCAGGCAAGTTACTTTCTCAAAGAGGAGAAAGGGTTTGATCAAGAAAGCCAAGGAGCTTGCTATCCTCTGCGATGCAGAAGTTGGTCTTGTTATATTCTCCAGCACTTCAAAACTTTATGAATATGCTAACACAAGCATGAAATCAGTGATCGAGAGATATAACTCATGCAAGGAGGAAGAACAACAACTCATAAATCCAGAATCTGAGGTTAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAACTACAGAACCTCCAAGAAAATCATCGGCAATTGATGGGACAACATCTTTACGGTTTGAGTGTGAGAAACCTACAAGATCTAGAGAACCAACTAGAAATGAGTCTCCAAGGTGTCCGAATGAAAAAGGAACAAATTCTAACAGAAGAAATCAAGGAGCTGAACCGAAAGGGCAATCTTATCCATCAAGAAAATTTGGAACTTTTTAAGAAAGTGTATGGCACAAGCGAAATGGAAGCAACAAGCAGAAATGGATTTATTCCAATTCCATATGGTATTCAAGTAGGAGGAGGAGGCTCACAGGAATTAGTCCAACTTCAGTTATGCCAGCCAGAGCAAGAAGCGTGTGAGACTTCAGCAAGTGCAACAAAATGA 1557 0.4136 MEHVGINVNSISSANYTAWNASKHSNDIADAWIIQFNKQDSKSCLNRLQLDFPRLQVITQNDMLFNLGSSALLWTQSLVMERVQKRLGRWWLHRLLERVSSIIDDFERGAGPRRYRKLGQGGFGAVYRGYFADLDLVVAVKKISSGSRQGRREYVTEVKVISRLRHRNLVQLIGWCHDQGEFLLVYEYMPNGSLDSHLFGNRTPLSWNLRHKIALGLASAILYLHEEWEQCVIHRDIKPSNVMLDSSFNVKLGDFGLAKLIDHELGSQTSALAGTIGYMAPEYISSRRIRNPRLLKMGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTSKLYEYANTSMKSVIERYNSCKEEEQQLINPESEVKFWQREAEILRQQLQNLQENHRQLMGQHLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTEEIKELNRKGNLIHQENLELFKKVYGTSEMEATSRNGFIPIPYGIQVGGGGSQELVQLQLCQPEQEACETSASATK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00058 518 PRINTS MADS domain signature 299 319 IPR002100 GO:0003677|GO:0046983
Aip05g00058 518 PRINTS MADS domain signature 319 334 IPR002100 GO:0003677|GO:0046983
Aip05g00058 518 PRINTS MADS domain signature 334 355 IPR002100 GO:0003677|GO:0046983
Aip05g00058 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Aip05g00058 518 Gene3D Transferase(Phosphotransferase) domain 1 190 294 - -
Aip05g00058 518 ProSitePatterns MADS-box domain signature. 299 353 IPR002100 GO:0003677|GO:0046983
Aip05g00058 518 SMART madsneu2 297 356 IPR002100 GO:0003677|GO:0046983
Aip05g00058 518 SUPERFAMILY Protein kinase-like (PK-like) 112 287 IPR011009 -
Aip05g00058 518 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 178 IPR013320 -
Aip05g00058 518 Coils Coil 419 439 - -
Aip05g00058 518 Gene3D Phosphorylase Kinase; domain 1 118 189 - -
Aip05g00058 518 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 2 34 - -
Aip05g00058 518 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 100 286 - -
Aip05g00058 518 Pfam Protein kinase domain 115 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00058 518 ProSiteProfiles Protein kinase domain profile. 112 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00058 518 Gene3D - 309 404 IPR036879 GO:0003677|GO:0046983
Aip05g00058 518 SMART serkin_6 112 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00058 518 Coils Coil 382 409 - -
Aip05g00058 518 ProSiteProfiles K-box domain profile. 382 472 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g00058 518 ProSiteProfiles MADS-box domain profile. 297 357 IPR002100 GO:0003677|GO:0046983
Aip05g00058 518 PANTHER - 2 34 - -
Aip05g00058 518 PANTHER - 100 286 - -
Aip05g00058 518 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 306 353 IPR002100 GO:0003677|GO:0046983
Aip05g00058 518 ProSitePatterns Protein kinases ATP-binding region signature. 118 142 IPR017441 GO:0005524
Aip05g00058 518 Pfam K-box region 379 466 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip05g00058 518 SUPERFAMILY SRF-like 298 388 IPR036879 GO:0003677|GO:0046983
Aip05g00058 518 CDD MADS_MEF2_like 298 374 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00058 Aip-Chr5 641309 656964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00058 97 288 Receptor kinase-like Gene Family AT5G10530 67.633 2.75e-98 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aip05g00058 Pkinase 3.2e-41 CL0016
TF MADS-MIKC Aip05g00058 Pkinase 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00058 - - gmx:100795778 371.318