Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00052 ATGTCTTATTATAAATACACTCATCACACAATTGATTTGGAGTTTCAGGTGATCCTTCAAAACGGTATCGTTTCCATCACTTTGGCAAAACCTGGGGGCTATATTCTTGGAATATCATATAATGGAATTGACAACATACTTGAAGCTCGAAATGACAAAAAGAATAGAGGAACCGAGACGACAGATTTTAAAGTTATAGCACAGGACCAGAATATGGTGGAAGTTTCATTTACAAGAACATGGTCACCTTCACGAGGTGGTGGTGTCCCCTTCAATATAGACATAAGGTATATATTGAGAAGAGGGGATTCTGGGTTTTATCCATACGTAATATTGGAACGCCTAGAAGGATTTCCAGCTGTGGAAATTGATCAAATTAGGATTGTTTTCAAGCTCGCCGGTGACAGGTTCCACTATATGGCTATATCAAACACAAGGCAGAGGATGATGCCATCTAAAGCAGATAGAGAAAATGGTCAAACCCTAGATTATCCTGAAGCCGTTCTCTTAACCAAGCCATTAGAACGAAATTTTCTTAGAGAGGTGGATGATAAGTACCAATACTCAATCGAGAATGAAGACAACAAGGTTAATGGTTGGACAAGCCCATATTCTGAGCCACGTGTTGGGTTCTGGATCTTAACACCCAGCAATGAGTTCCGCAATTGTGGGCCTATTAAGCAAGATCTCACCTCTCATGTTGGCCCAATTGCCCTCTCGATGTTTGTGAGCAACCACTATGCTGGAAGGGAGGTAAATATGAAATTTCAGGAAGGGGAACTTTATAAGAAGGTTTTTGGCCCTGTTTTTATCTACCTCAACTCTGGTCCAAGTAATCAAAATTTGTGGTTAGATGCCGTACAAAAGCAATCCAATGAAGCCAAAAGCTGGCCATATAATTTTCCTCGATCAATCGATTTCATTCCAGCCAATAAACGTGGAACAGTGTCAGGAAGGTTGCAAGTCCAAGATAGGTTCATCAAAGGACAGAGCCTTCAAAATGCTAACAGTGCGTACGTTGGTTTAGCTTCACCTGGAGATCCTGGATCATGGCAGAAAGAAAGCAAGGGTTATCAATTTTGGACTCGAACCGACAAGAAGGGTAATTTTGAAATAAACAATATTGTACCCGGTGATTACAATTTGTATGCATGGGTTCCTGGTTTTATTGGAGACTACAAATACAATAACACAATAACCATCACACCAGGATGCTCCACCAACTTGAATACACTTGTGTATAATCCTCCAAGAAATGGTCCAACACTTTGGGAGATTGGAATTCCTGATCGCTTAGCTGCTGAATTTTTTGTGCCAGACGCTAACCCTAAGCTCATGAACAACTTATACAAGAATCACACCATTGACAAATTTAGGCAATATGGATTGTGGGAACGTTACGCGGAATTACATCCACATAATGATCTTGTATTCGTTGTTGGTGCTAATGACTATCGCAAGGATTGGTACTTTGCTCACGTTACAAGGAACATAGGAGAGAAGAAATACAGACCAAGCACATGGCAAATTGTATTTGACCTTCCAAATGTCACATCCAGAGGAATATACACACTACAACTGGCTTTGGCATCCTCAACTGAAGCCAAATTGCAGGTTTGGTTCAATGACCCTAAAAATGCAAATCCTGCACACTTCACAACAGGACAAGTAGGAGGAGACAATGCCATAGCAAGGCATGGCATCCATGGATTGTATAGGCTCTATAGCATAGGTGTAAGTGGGAAGCATTTGGTGAAAGGAAAGAACATCATCTATTTGAAGCAATCTAAAGCTTTAACTGCTTTTCAAGGAGTCATGTATGATTATATCCGCTTAGAAGGTCCTCCACCTTCATCCCCTGGATTTGATCACTAA 1875 0.4075 MSYYKYTHHTIDLEFQVILQNGIVSITLAKPGGYILGISYNGIDNILEARNDKKNRGTETTDFKVIAQDQNMVEVSFTRTWSPSRGGGVPFNIDIRYILRRGDSGFYPYVILERLEGFPAVEIDQIRIVFKLAGDRFHYMAISNTRQRMMPSKADRENGQTLDYPEAVLLTKPLERNFLREVDDKYQYSIENEDNKVNGWTSPYSEPRVGFWILTPSNEFRNCGPIKQDLTSHVGPIALSMFVSNHYAGREVNMKFQEGELYKKVFGPVFIYLNSGPSNQNLWLDAVQKQSNEAKSWPYNFPRSIDFIPANKRGTVSGRLQVQDRFIKGQSLQNANSAYVGLASPGDPGSWQKESKGYQFWTRTDKKGNFEINNIVPGDYNLYAWVPGFIGDYKYNNTITITPGCSTNLNTLVYNPPRNGPTLWEIGIPDRLAAEFFVPDANPKLMNNLYKNHTIDKFRQYGLWERYAELHPHNDLVFVVGANDYRKDWYFAHVTRNIGEKKYRPSTWQIVFDLPNVTSRGIYTLQLALASSTEAKLQVWFNDPKNANPAHFTTGQVGGDNAIARHGIHGLYRLYSIGVSGKHLVKGKNIIYLKQSKALTAFQGVMYDYIRLEGPPPSSPGFDH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00052 624 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 616 - -
Aip05g00052 624 Gene3D - 308 412 - -
Aip05g00052 624 CDD RGL4_C 424 613 - -
Aip05g00052 624 Pfam Polysaccharide lyase family 4, domain III 422 612 IPR029411 -
Aip05g00052 624 Pfam Polysaccharide lyase family 4, domain II 336 409 IPR029413 -
Aip05g00052 624 SUPERFAMILY Galactose mutarotase-like 23 278 IPR011013 GO:0003824|GO:0005975|GO:0030246
Aip05g00052 624 Gene3D - 420 613 - -
Aip05g00052 624 Pfam Rhamnogalacturonate lyase family 60 181 IPR010325 -
Aip05g00052 624 Pfam Rhamnogalacturonate lyase family 15 57 IPR010325 -
Aip05g00052 624 SUPERFAMILY Starch-binding domain-like 308 412 IPR013784 GO:0030246
Aip05g00052 624 CDD RGL4_N 16 282 - -
Aip05g00052 624 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 616 - -
Aip05g00052 624 CDD RGL4_M 312 412 IPR029413 -
Aip05g00052 624 Gene3D - 6 289 IPR014718 GO:0030246
Aip05g00052 624 SUPERFAMILY Galactose-binding domain-like 419 613 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00052 Aip-Chr5 597912 602708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00052 1 615 Polysaccharide Lyase AT1G09890 53.834 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00052 K18195 - gmx:100776664 823.542