LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip05g00034	ATGGCTCGTGCAACTAACTGGCTATCGTTTTCGCTTTCTCCAATGGAAATGCTAAGGACATCCGAGCCACAGTTCCCCCAATACGACGCCGCTTCAGCCACCACCAACTACTTCGTAGATAACTTCTACGCCAACGGTTGGGGAAACCAGGGGAAGGAACAGCAACCGCACGGCATGGTGGAGCAGTCGCTATTTATGACGAGCTACGTGGACTCGTCGCAGAACCTAAGTCACGCGCCGTCGCATGCTGCGGCGACGACTGTGGTGCCGAAGCTGGAGGATTTTCTCGGCGATTCGTCGTCGTCGATGATGCGATACTCCGATAGCCAGACGGAGACGCAGGATTCGTCGCTGACGACGCACATGTACGACCACGGCGGCGCGTACTTCGGCGGCGAGCACCAAGATCTGAAGGCCATTACTGGATTTCAAGCTTTCTCCGGCGCTAACTCGGGGTCTGAGGTGGACGACTCAGCCTCCATCGGTAGGGCGCAGCACGGCGGTGGGAACGAGTTCGGAACTCGCTCCGTTGATTCCTCCGGGAACGAGCTGGCGTTCTCCAACGGCGGCGCTGCCGCTACCGCTACCGGAGCTTTGTCACTAGGCGTAGCGCAGAGTTCGGCGGAGAAGGCCGTCGTAGTATCCGATTCCGATAGTTCGAAGAAGATCGTCGATACATTTGGCCAGCGAACTTCAATTTACAGAGGAGTCACTAGACACCGATGGACTGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCCAGAAAAGGGCGTCAAGTCTACTTGGGTGGATATGACAAAGAAGAAAAGGCCGCGAGAGCTTATGATTTGGCAGCTTTAAAGTATTGGGGTCCCACTGCTACCACCAACTTCCCTGTTTCCAATTACCCAAAGGAACTGGAGGAGATGAAACATGTAACAAAGCAAGAATTCATTGCATCACTGAGAAGGAAAAGTAGTGGCTTTTCCAGGGGAGCTTCCATATACAGAGGTGTGACAAGGCATCACCAACAAGGTAGGTGGCAAGCAAGAATTGGTCGCGTTGCCGGAAACAAAGATCTTTACTTGGGAACATTCGCAACTGAAGAGGAAGCTGCTGAGGCATATGATATAGCAGCTATAAAGTTCCGAGGTGCAAATGCAGTAACCAACTTTGAGATGAGCAGGTACGATGTTGATGCCATAATGAAGAGCTCTCTTCCTGTTGGTGGCGCTGCGAAACGCTTGAAACTCTCCCTAGAATCAGAGCAGAAGTCTGCTATCAACGCCATCACCACCGGCAGCCAGCAGCAACAACCAGTGTGTGCAAACATGAGTGGCAGCAATATCAACTTCTCATCAACCATACATCAGCCAATTGCTTCCATCCCCTGCCGAATCCCATATGATTCCGCGCCAGCTTATTATCACCACAACCTCTTCCACCATTTCCACCCCACTAACGGTGTAGAAACCGCCGTAACTTCTGCCAATGCCGCTGGACTGACTGCACCGCAAGTGGCGGCAGCAGCACCTGAGTTCTTCATATGGCCTCCCCAGTCCTATTGA	1569	0.5264	MARATNWLSFSLSPMEMLRTSEPQFPQYDAASATTNYFVDNFYANGWGNQGKEQQPHGMVEQSLFMTSYVDSSQNLSHAPSHAAATTVVPKLEDFLGDSSSSMMRYSDSQTETQDSSLTTHMYDHGGAYFGGEHQDLKAITGFQAFSGANSGSEVDDSASIGRAQHGGGNEFGTRSVDSSGNELAFSNGGAAATATGALSLGVAQSSAEKAVVVSDSDSSKKIVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYPKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMSRYDVDAIMKSSLPVGGAAKRLKLSLESEQKSAINAITTGSQQQQPVCANMSGSNINFSSTIHQPIASIPCRIPYDSAPAYYHHNLFHHFHPTNGVETAVTSANAAGLTAPQVAAAAPEFFIWPPQSY	522

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip05g00034	522	SUPERFAMILY	DNA-binding domain	334	395	IPR016177	GO:0003677
Aip05g00034	522	Gene3D	AP2/ERF domain	335	395	IPR036955	GO:0003700\|GO:0006355
Aip05g00034	522	Gene3D	AP2/ERF domain	233	301	IPR036955	GO:0003700\|GO:0006355
Aip05g00034	522	PRINTS	Ethylene responsive element binding protein signature	234	245	IPR001471	GO:0003700\|GO:0006355
Aip05g00034	522	PRINTS	Ethylene responsive element binding protein signature	375	395	IPR001471	GO:0003700\|GO:0006355
Aip05g00034	522	Pfam	AP2 domain	233	291	IPR001471	GO:0003700\|GO:0006355
Aip05g00034	522	Pfam	AP2 domain	335	385	IPR001471	GO:0003700\|GO:0006355
Aip05g00034	522	SUPERFAMILY	DNA-binding domain	232	301	IPR016177	GO:0003677
Aip05g00034	522	ProSiteProfiles	AP2/ERF domain profile.	335	393	IPR001471	GO:0003700\|GO:0006355
Aip05g00034	522	SMART	rav1_2	335	399	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip05g00034	Aip-Chr5	458963	464490	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip05g00034	63	522	AP2-EREBP Transcription Factor Family	AT5G10510	57.974	1.90e-167	483

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Aip05g00034		AP2	9.9e-13	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip05g00034	K09285		-	gmx:100775390	722.235

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