Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00033 ATGGATGCAATTCAGAGGGAAAAAGTCTATGTTGGTGTTGGAATTGATGTGCAAGATGGATTCAAGGTTTTGAATTGGGTTCTCAAGAATTGGAACAATAATAATTCTCATCCAATTTCTATTGTTATTCTCCATGTTGCTCACAACTTCTCCAATGATTATGTTTCTACACCATTTGGGAAACTTCCAGCAAGATCTGTGAATGAAGAGAAGCTTGAAGTTCTAAAGAAGTATGAGCAAGATAAAATCAAGAAGCTCTTTTCCAAGTATATTGCTTATTGTGATAAAGCCAAGGTGCCGGCAGAAATTCTTGAAGTTGAGAAAGTTGATGAACCTATCCAAAAGCGCATCCTAGATTTGATCTTTAGCCTTGGAATTACCAAATTGGTCATTGGCTTTTCATTCATGAAGCCCTCCTTGAAATCAAGAAGTGCCATAAGTGGATTGTTCTATGTTCACCAGCACAAACCATCATTCTGTGAATTGTTCATAGTTTGTGGTGGAGAACAAGTGTTCCTAAGAGCAAAAAATGAAGAGAAAATCATGGAGGATGAAAATGGTGTCACGGTTGCAAGGTTAAAGGACAAGGTAACCTTCAAAGATTGGCTTGAGAAAATAATGTTCAACGATAATAATAATAATAATAATAACAAATCAAACGCATCAACTTCAAAAAATCTTGAGTCATCAGCAGTTACCCAGAATCAATGGGAATTTTATCTTCGAGAAATTGATAATTACTATCAAGAATTGTTGATGTCATACTCCAATTTGGATGAGAGAAGCTGTGTGCAAGAAAATGATGGTTCATCACAGATTGGTCCAATTGAGACAGGTGTCATTATTGAACAGAACAATTCTTCTTCTAATACGAGTGCTACAGAAAAAATTGAGATCCTACAAAATAAATTGAATGAAGCTCAAATGACCATCCAAATGAAGAGGAAAGAAGCCAAGGATCAAATAGAGAGGCGCACAAAAGCAGAATGGGCAATATGTTTATGCAATAGTAGGGCTGAAGAAGTTGAATCAAGAATAAAGGAAGAAGTGAGCGCAAGGGAAGAAATTAAGAAGGAAGTAGAGGAAGAAAAAGAACAAACGCAGGAGATTCGAGTAGACGTAGAAGAGAGGAAGAGGAGGCTAAAGTCACTATCAGAGCTCCATTCCGAGCTCTCAAAGAGGGTGCACGTGTCCAAGATGGCCAAGTCACGTGCGGAGAGGCAGCTGGAGAAAGCGATTGCGGAGAGAGCGGAGATGGTGAGGGAGATAGAGGAGCTGAGGAGACAGAGGGACGTGCTCAACAGAAGGATCGAGTTCTGCAAACAGAAGGACGCAATTGGAATGGCGGCAAGGCTCATGAGCCAAGAGGAGGCGGCTGCGTGCGCTTTCAGGGAGTACTCCGAGGAGGAGCTCCGCCTGGCCACGGACAACTTTTCCGACAGGTTGAGGTTCAAGTCCGGTGGGGATTGGAGCCATGTGTATAAAGGACGCATGCCTCATTCCACCGTTGCCATCAAGATGCTTGCTTCTTCTTTGTCCCTCCAAGATTTCCAATCTAAGGTGAGAATTCTTGGTGATATTAGGCAGCCTCATCTGATTGCTATGGTGGGCTTTTGCTCCGAGCCCAAATGCGTAGTATTGGAATACATGCACAACGGAAGCTTACGAGACATACTATTTTCTAGGAGAAGAAACCGGGCTTTAAAGTGGCATGATAGAATACGAATAGCTACAGAAGTTTGCTCGGGCCTAAGCTTTCTAAATTCAGTTAAACCAAGGCCCGCTATCCATTGTCACTTGACCCCATCCAACGTCCTCCTAGACCGGAACTATGTAGCCAAGATCACGGGCTTTGGGCTTGATGAGTGCCACGACGAGGAGTGTAACGTTGAATCAGATATCCGGGCCTTGGGGGTGTTTTTGCTACATCTTCTAACAGGAAGAAATTGGGCCGGGCTTATTGAGGAGGCGATGATAGTAGACACGGATAGAGAAGCATTTGTTGGGGTTCTCGATGAGACGGCCGGAGCATGGCCGTTGGATCTAGCTAGAGAGATTGCGGGCCTAGGGATGAGGTGCATGTCGAGGGCAGAGTTGAGTATTGGAATGGTGATGGAGGAGCTGAGAGAGATTAGAAGAAAGGGTGATGAGATAGCAGCAAGAGAAGGGCGAAGGGTAATGAGAAGTGGAAGTGGTGCAGATAGAGATTGGTCAAGTGCTGTACCGAGTGTTTATCTTTGCCCTATACTTCAGGATGTAATGAAGAATCCACACGTGGCGGCAGATGGCTTTTCATACGAGCTTGAAGCAATACAACACTGGTTGCAAACGGGACATGACACGTCACCAATGACAAACTTAAGGCTTAAACACACATTCCTCACCCCTAATCACAGCCTTCGCTCCTTAATTGAAGATTGGCATACCAAGAATAATACATCATCTGCAGTTTTAAATTAG 2460 0.4341 MDAIQREKVYVGVGIDVQDGFKVLNWVLKNWNNNNSHPISIVILHVAHNFSNDYVSTPFGKLPARSVNEEKLEVLKKYEQDKIKKLFSKYIAYCDKAKVPAEILEVEKVDEPIQKRILDLIFSLGITKLVIGFSFMKPSLKSRSAISGLFYVHQHKPSFCELFIVCGGEQVFLRAKNEEKIMEDENGVTVARLKDKVTFKDWLEKIMFNDNNNNNNNKSNASTSKNLESSAVTQNQWEFYLREIDNYYQELLMSYSNLDERSCVQENDGSSQIGPIETGVIIEQNNSSSNTSATEKIEILQNKLNEAQMTIQMKRKEAKDQIERRTKAEWAICLCNSRAEEVESRIKEEVSAREEIKKEVEEEKEQTQEIRVDVEERKRRLKSLSELHSELSKRVHVSKMAKSRAERQLEKAIAERAEMVREIEELRRQRDVLNRRIEFCKQKDAIGMAARLMSQEEAAACAFREYSEEELRLATDNFSDRLRFKSGGDWSHVYKGRMPHSTVAIKMLASSLSLQDFQSKVRILGDIRQPHLIAMVGFCSEPKCVVLEYMHNGSLRDILFSRRRNRALKWHDRIRIATEVCSGLSFLNSVKPRPAIHCHLTPSNVLLDRNYVAKITGFGLDECHDEECNVESDIRALGVFLLHLLTGRNWAGLIEEAMIVDTDREAFVGVLDETAGAWPLDLAREIAGLGMRCMSRAELSIGMVMEELREIRRKGDEIAAREGRRVMRSGSGADRDWSSAVPSVYLCPILQDVMKNPHVAADGFSYELEAIQHWLQTGHDTSPMTNLRLKHTFLTPNHSLRSLIEDWHTKNNTSSAVLN 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00033 819 CDD RING-Ubox_WDSUB1_like 745 786 - -
Aip05g00033 819 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 5 810 - -
Aip05g00033 819 Gene3D Transferase(Phosphotransferase) domain 1 464 697 - -
Aip05g00033 819 ProSiteProfiles U-box domain profile. 740 814 IPR003613 GO:0004842|GO:0016567
Aip05g00033 819 SMART Ubox_2 744 807 IPR003613 GO:0004842|GO:0016567
Aip05g00033 819 Pfam Protein tyrosine and serine/threonine kinase 488 626 IPR001245 GO:0004672|GO:0006468
Aip05g00033 819 Coils Coil 339 394 - -
Aip05g00033 819 ProSiteProfiles Protein kinase domain profile. 479 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00033 819 SUPERFAMILY Protein kinase-like (PK-like) 463 655 IPR011009 -
Aip05g00033 819 Pfam U-box domain 741 812 IPR003613 GO:0004842|GO:0016567
Aip05g00033 819 Coils Coil 402 443 - -
Aip05g00033 819 Coils Coil 290 324 - -
Aip05g00033 819 PANTHER OS02G0152300 PROTEIN 5 810 - -
Aip05g00033 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 740 816 IPR013083 -
Aip05g00033 819 SUPERFAMILY RING/U-box 729 812 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00033 Aip-Chr5 427474 432737 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00033 7 810 U-box Gene Family AT5G65500 48.652 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Aip05g00033 PK_Tyr_Ser-Thr 3.5e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00033 - - ahf:112747336 1532.31