Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00019 ATGCAGCGAGTTCGAAATCACTATTACTCTGGAGCTCAAATTCTAAGGAGTTCTTCAATAACACCATATGATTACATATTCACAAAGCCAAGATCAAAGGCAGCGGACAAAAAACAAGCAGCTGTAAAACACAGTCAAGCAGAAAAGAGACGCAGGATGAGAATCAACACTCAATATGAGGCCCTCAAAAACCTCTTCCAAAATAAAACAAAAACGGACAAGGCATCATTATTGACAACTACTATTGAAATAGTTAAAAATTTGAGAAAAAATAGTATTCCACAGGAAGCTTCTAGTAGCTCAAAGAAGGAAATGAATAAGGTTACTAACCAGAAGAAAATGCAAGAAGCTTGTAGCCCAAGAAATGATGATGTGTTTCCTAGTTGGGAAGACAAGTGGAGTCTAAAACATGAAGAGGGTCTAATGAAGGCTACATTGAGTTGTGAGGATAAGCCAGGATTGATGTCAACAATAGCAAAGGCAATGGGGTCAGTGGAAGCCAAGGTTGTAAAGGCTGAGATGGTGAATGTTGGAGGAAGAACTAGGGTTGTGTTGTGGGTCAAAGATTCCAATGGTGATCGTAAAGGTGAAGAGATTCTCAAGAGGACACTCAGTACTCTCATGCAAAGGCCAGTCCCTAAAAAGAGGCGTTTTACTCAATAA 663 0.3967 MQRVRNHYYSGAQILRSSSITPYDYIFTKPRSKAADKKQAAVKHSQAEKRRRMRINTQYEALKNLFQNKTKTDKASLLTTTIEIVKNLRKNSIPQEASSSSKKEMNKVTNQKKMQEACSPRNDDVFPSWEDKWSLKHEEGLMKATLSCEDKPGLMSTIAKAMGSVEAKVVKAEMVNVGGRTRVVLWVKDSNGDRKGEEILKRTLSTLMQRPVPKKRRFTQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00019 220 SMART finulus 45 94 IPR011598 GO:0046983
Aip05g00019 220 Gene3D - 35 98 IPR036638 GO:0046983
Aip05g00019 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Aip05g00019 220 CDD ACT_UUR-ACR-like 145 209 - -
Aip05g00019 220 ProSiteProfiles ACT domain profile. 143 220 IPR002912 -
Aip05g00019 220 SUPERFAMILY ACT-like 145 207 IPR045865 -
Aip05g00019 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 32 90 IPR036638 GO:0046983
Aip05g00019 220 PANTHER TRANSCRIPTION FACTOR BHLH131 20 215 - -
Aip05g00019 220 Pfam Helix-loop-helix DNA-binding domain 42 88 IPR011598 GO:0046983
Aip05g00019 220 PANTHER TRANSCRIPTION FACTOR BHLH30 20 215 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00019 Aip-Chr5 266548 267554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00019 44 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 32.370 6.28e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00019 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00019 - - adu:107487037 424.861