Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00011 ATGGAATTCGACGAGCAAGAGGAGCAAGAAGAAGAGCTGTGTGTGCCAGGAGGAACGGGTTATGACCCTCTTGGAAACCCGACCCGGGTTAAAATGTCCGGTTCGGAACCCATGTTGGTGGTTCAACCCATGACCGTGAGGAACAACAACAACAACAACAGCAGCAACATGGTGAAGCCAAGATACAGAGAGTGTTTGAAGAACCATGCCGTGGGGATCGGCGGACACGCACTCGACGGTTGCGGCGAGTTCATGCCCGCCGGCACGGAGGGAACCCTCGACGCACTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACTGAGCTCGCCGGAGCAGGACCAGGAGGAGGAGGACCTTATCTCCTGACTCACCACCCCCACCACCACCAGCCGCCGCCGTTTGCGGCCTACTACCGCACTCCGGCGGGGACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGAACTTGCAGAGAGATTGGGATGGCGGATTCAGAAACACGACGAGGGTGCGGTTCAAGAGTTTTGTAACGAGACGGGTGTGAAGCGGCATGTTCTCAAGGTTTGGATGCATAACAACAAACACACCCTCGCTTCATGA 618 0.5696 MEFDEQEEQEEELCVPGGTGYDPLGNPTRVKMSGSEPMLVVQPMTVRNNNNNNSSNMVKPRYRECLKNHAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKETELAGAGPGGGGPYLLTHHPHHHQPPPFAAYYRTPAGTKFTQEQKEKMLELAERLGWRIQKHDEGAVQEFCNETGVKRHVLKVWMHNNKHTLAS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00011 205 SUPERFAMILY Homeodomain-like 147 202 IPR009057 -
Aip05g00011 205 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 43 146 - -
Aip05g00011 205 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 149 203 - -
Aip05g00011 205 Pfam ZF-HD protein dimerisation region 61 112 IPR006456 -
Aip05g00011 205 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 149 200 IPR006455 -
Aip05g00011 205 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 111 IPR006456 -
Aip05g00011 205 MobiDBLite consensus disorder prediction 1 27 - -
Aip05g00011 205 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 149 203 - -
Aip05g00011 205 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Aip05g00011 205 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 146 - -
Aip05g00011 205 Gene3D - 144 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00011 Aip-Chr5 196439 197336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00011 1 203 ZF-HD Transcription Factor Family AT4G24660 47.826 5.08e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aip05g00011 ZF-HD_dimer 4.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00011 - - aip:107639896 362.459