Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00003 ATGGCATCTCTTCATGATATAACAGATTCTGCATCACCCGCCACCTTAGACTCAGAATCTGCATTGGCACCATTGGAACATTCATCCATTCATATTGAGTCACAATCTGctgcaccagttttgagaagCGAGGGAGAAGCCATTGCGGTGGTCGGGCAACTACCAATGCGAGGGAGAGGGGTTGTGGTGGTCGTCTTTGCTGCTGCGAATTGCAGAATAGAAAAGGGCGGCTACGGTGGTCGAGCGACGACACTACTACGAATCGCGAATCGGAATGGGGCTTCGACATTTGGTGGTGGCTGCAGCGCCTTGGTGTTCGTTGCTGCCATCGTCCCGCGCGCCTCCCTCGTGCTACCGTCGAGCGTCAGTCGTCGACTAGGAGCTCCCCGTCGCCGTCGCCTGCCCGCCGGACATCCGCACGCCCATGTGGACCTGTGTCGCACCATACTCATCTCTGAACGCCGCATCTTCTTTGCGTTGTCTGTGACTCAGGAGAGTAAGCTTAGAAGAGGCGTTGATATTGTTGTTGGCACTCCAGGTCGCGTGAAGGATCATATAGAGAGGAAAAATATTGACTTGAGCCAGTTAAAGTTCCATGTCTTTGATGAGGCTAATGAGATGCTCAGAATGGATTTTGTTGAAGATGTGGAACTAATTCTAAAAACTAACCCACTTACCGTGGATGGTCGGCGACGGTCTGGTTATGATGTTCGTGCTGGTCCCGGTGAATGGTCCACGGCAGGCGGCGACACAAGGCGTGGATCCTTAGCTGCGAACCGTGCCACGGGGATGCTTCCAGCCACGGCGTACAAGCGCGAAGACTGGGCGATGCTGGGTGGGTCGGCGGTGACGGATGTGCAAGGTTGGACAACAAGACACCGCGATGGTGTATGGCAGCGAATAGGGGTCGCCGACGCAGTTCTCGTCGGAGCTGATGCGGGTCGTGAGAAAGGCGGGTGCACGGAGGAGGGGTTGGTGACCAACAACAATGACGCGGCGAAGGGGGCTGGTGATCAGCGACAGTGA 1026 0.5458 MASLHDITDSASPATLDSESALAPLEHSSIHIESQSAAPVLRSEGEAIAVVGQLPMRGRGVVVVVFAAANCRIEKGGYGGRATTLLRIANRNGASTFGGGCSALVFVAAIVPRASLVLPSSVSRRLGAPRRRRLPAGHPHAHVDLCRTILISERRIFFALSVTQESKLRRGVDIVVGTPGRVKDHIERKNIDLSQLKFHVFDEANEMLRMDFVEDVELILKTNPLTVDGRRRSGYDVRAGPGEWSTAGGDTRRGSLAANRATGMLPATAYKREDWAMLGGSAVTDVQGWTTRHRDGVWQRIGVADAVLVGADAGREKGGCTEEGLVTNNNDAAKGAGDQRQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00003 341 Gene3D - 151 274 IPR027417 -
Aip05g00003 341 PANTHER DEAD (ASP-GLU-ALA-ASP) BOX HELICASE 21 163 223 - -
Aip05g00003 341 Pfam DEAD/DEAH box helicase 163 223 IPR011545 GO:0003676|GO:0005524
Aip05g00003 341 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 282 IPR014001 -
Aip05g00003 341 MobiDBLite consensus disorder prediction 317 341 - -
Aip05g00003 341 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 163 223 - -
Aip05g00003 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 227 IPR027417 -
Aip05g00003 341 MobiDBLite consensus disorder prediction 323 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00003 Aip-Chr5 44600 52319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00003 168 224 Eukaryotic Initiation Factors Gene Family AT3G13920 42.105 6.57e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00003 K16911 - twl:119988977 97.8265