Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00002 ATGGACAAAGCGCTGAGGCGCCTCAACGGCATGTCCCCCCTTCCCGAACCACCTTCCAACAAACCCACCAAGCGGACCATGCGAGACACCAGCACTGCGCCCGCCGCCGGAGCCATGAGGTACCGTGGCGTCAGGCGGAGGCCATGGGGCCGTTACGCCGCCGAGATAAGGGACCCTCAGTCCAAGGAGCGCCGTTGGCTGGGGACTTTCGACACCGCAGAGGAAGCCGCCTGCGCCTACGACTGCGCTGCCAGAGCCATGCGTGGCCTTAAGGCCAGGACAAACTTTGTGTACCATACTTCACCTCCTCACTCTTCTTCCATCACCATCACTAACAACCATAACAACCTCCTTAACCTCCATAACCACCTCTTCACTCATAACCAGTTCAGCTTCCTTAATCATCATAACCAACTCTTCAACGGCCATAACCGCCACTTCGGGGGTTGTTGGTCTGACCCTTCTTCTTCTTCAACCTTCCAACAACAGCGAAACCTTCACTCCATCGACATGCTTCTCCAGGACTTTATAGCCTCTTCTTCCCCCGACTATTTATGCGACACCAAGGGCAGTTTTGTCAATTCACATCCTGTAAATGTTGCTAATAACTACAGCGCACCTTGTTCTGACACAAGCCATGTCGGTTGTGGCAGTGGAAGCAAGATCGATAATACTACTACTACTACTACTAATAATAATAATAATAATAATAATAATAATAATAAAAAAGCTGATCATGGTGGTGGGGAAGAAGACTCAAAGGAGCAACTGTATGAAGGTTCAGAGTCGTCAGGCTTGTTGGAAGAAATAGTTAATGGTTTCTTGAAGAAAAAGCCAAAGCTCAACAAATGCGAGAGATCGTTAGGTACCAGTACCACTGCTACAGACGGTTCATGCCACTCGTCACTTCTTCCCCCTCCTCTTCCTCTGGTTGTTTCCGGCGAGTCGAAGAGAAACGATGGTTTCGGCGTGCATTTGGATCAGCAGGGTTTCCATTACATGCAGCAGATTGGTGGTGGTTTCAATAATGATTTTAGCAATATGGTTATGCAGCCTAACATGCCTCTTCAAGAGAATGACAACCAAATCATGAAGATGATGATGTTGAATAATGATAATAATCATGCAGAAGTAGATTGCTCTATCATAGACAACATTTTTCAGGATGCATAA 1173 0.4766 MDKALRRLNGMSPLPEPPSNKPTKRTMRDTSTAPAAGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYHTSPPHSSSITITNNHNNLLNLHNHLFTHNQFSFLNHHNQLFNGHNRHFGGCWSDPSSSSTFQQQRNLHSIDMLLQDFIASSSPDYLCDTKGSFVNSHPVNVANNYSAPCSDTSHVGCGSGSKIDNTTTTTTNNNNNNNNNNNKKADHGGGEEDSKEQLYEGSESSGLLEEIVNGFLKKKPKLNKCERSLGTSTTATDGSCHSSLLPPPLPLVVSGESKRNDGFGVHLDQQGFHYMQQIGGGFNNDFSNMVMQPNMPLQENDNQIMKMMMLNNDNNHAEVDCSIIDNIFQDA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00002 390 MobiDBLite consensus disorder prediction 1 40 - -
Aip05g00002 390 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Aip05g00002 390 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Aip05g00002 390 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Aip05g00002 390 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Aip05g00002 390 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Aip05g00002 390 MobiDBLite consensus disorder prediction 227 243 - -
Aip05g00002 390 MobiDBLite consensus disorder prediction 244 258 - -
Aip05g00002 390 Gene3D AP2/ERF domain 39 98 IPR036955 GO:0003700|GO:0006355
Aip05g00002 390 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
Aip05g00002 390 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 23 368 - -
Aip05g00002 390 MobiDBLite consensus disorder prediction 227 262 - -
Aip05g00002 390 CDD AP2 40 96 IPR001471 GO:0003700|GO:0006355
Aip05g00002 390 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00002 Aip-Chr5 42957 44129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00002 39 98 AP2-EREBP Transcription Factor Family AT1G24590 96.667 1.91e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g00002 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00002 - - aip:107639893 701.434