Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03879 ATGGGGCTGTTGTCAGAAGAGGCATTGGAAGGTACGCTTGCTTTCTATACATCCATCCATCTTGCCTTGATGAATGATGATGCTTTAATTTGGTTTTTTTTTATTCTCAGAAGCGAGTTGAAGAACTTGGATCCATTTTTGATGTTGGATCACTTCTCAGTATCCCCCCCTGGAGGATTCCCTGATCATCCCCACAGAGGTTTTGAGACCGTTACCTACGTCCTAGAGGGGGGCATAACTCACCAAGATTTTGCAGGGCACCAGGGCACAATCAGAGCTGGCGATGTTCAGTGGATGACCGCAGGCAGGGGAATCATTCACTCTGAGATGCCTGCCCAACCAACCAACAACAACGGCTTGCAGCTATGGATCAACTTATCCGCCAACAACAAGATGATTGAACCCAACTACCAAGAACTTCTGAGCGAGAACATACCATCGGCAGAGCAGGAAGGGGTGGAGGTGAGAGTGATAGCAGGAGAAGCAATGGGGGTGCATTCCCCGGTCTATACTCGAACTCCAACCATGTTCCTTGACTTCACGCTACGTCCCGGAGCTGAGTTGCATCAGAGCATTCCGGAGACATGGAACTCCTTTGTATACGTCATTGAAGGTGAAGGAGTGTTCGGCTCTCCAACTTCATCGCCAACTGGCCCATACCATGTGCTGGTTCTGAGCCAAGGGGATGGCCTCAGCGTCTGGAACAACAACAACAACTCCTCTTCAAAGCCTCTCAGGTTTGTGCTCATTGGAGGCCAGCCACTGAACGAGCCCGTGGCTCAGTATGGCCCTTTTGTCATGAACACACAGTCTGAGATCGAAAAGACCATTGAGGACTATCAGTATTGCAGGAATGGCTTTGAGATGAGGAGGTATTGGACCTCTCTCTAG 891 0.4972 MGLLSEEALEGTLAFYTSIHLALMNDDALIWFFFILRSELKNLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYVLEGGITHQDFAGHQGTIRAGDVQWMTAGRGIIHSEMPAQPTNNNGLQLWINLSANNKMIEPNYQELLSENIPSAEQEGVEVRVIAGEAMGVHSPVYTRTPTMFLDFTLRPGAELHQSIPETWNSFVYVIEGEGVFGSPTSSPTGPYHVLVLSQGDGLSVWNNNNNSSSKPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYQYCRNGFEMRRYWTSL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03879 296 PANTHER PIRIN-RELATED 35 295 IPR012093 -
Aip04g03879 296 PANTHER PIRIN-LIKE PROTEIN 35 295 - -
Aip04g03879 296 SUPERFAMILY RmlC-like cupins 26 293 IPR011051 -
Aip04g03879 296 CDD cupin_pirin_C 174 254 - -
Aip04g03879 296 Gene3D Jelly Rolls 36 281 IPR014710 -
Aip04g03879 296 CDD cupin_pirin_N 35 126 - -
Aip04g03879 296 Gene3D Jelly Rolls 146 255 IPR014710 -
Aip04g03879 296 Pfam Pirin 38 124 IPR003829 -
Aip04g03879 296 PIRSF Pirin 25 294 IPR012093 -
Aip04g03879 296 Pfam Pirin C-terminal cupin domain 177 286 IPR008778 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03879 Aip-Chr4 132992946 132994820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03879 35 291 Calmodulin-binding Proteins AT3G59220 62.016 2.28e-117 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03879 K06911 - gmx:100802145 432.18