Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03874 ATGGCATCGTCACTGGAGGAGCTTCTTGCCAAGGAAGGGTTCAAAGGAATCAGAAGAGTGGAAAGGACTAGATCATCCTTTCACGGTGGTGCTTTGACTGAGCCACGGAGACTCTCCCTATCGACTGAAGGAGTTACAAGGATCAGAACAAAGTCTGAGTCCTCTTCCTTTCAGGGTCAAAGCAGGAGGCCAAGGGATAAGCCCTTTCTTAGAGAGAAAATAATACATCAACGGTTGAACTATGAAGCTGCTCAGAAACCTTGTGACAACACAATTGAAGTTTCTAATAATGCAGAAAGAGGCAAAGAAATTCCTGCCATGACAAATAATAACTCAAGTCGCACAAGTTTTGAAGACAGAAACAACAAAAAGAATCAAGATCACTATATTCATTCGGCTTCTAATCTTGCTCTTGATCAAGTTGCTGTCCAAGCAGTAGTGTCCATTCTGAATGGATACATGAAACGTTTTCTAGGAGATGAGGACTTCCGGGCTACACTGCGTCATAATTGTTTCTCCTCTTTGAATTTCATTGAATTGAAAGAAGAGAACAATACTGAGACCAAAATCATAACAAGCCTTGAGCAAGCAATCGAGACCATTGAACAAACTGCAGAGCAGTCTGCACCTTCCACACATCTGAAAAGAGCCACAATGCAGTTAAGCATCATCACGGGCCTGAGTTTAAACGATTTGAAGCACGGTTGTACCTGTGGGATCCCGAATTATAAGTTGTCAGCCTGTGCTCATCTTTATCTCAGTGTGGTATATGTGATACAGAGAAAAAGCAAGGTATCTGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCGCCTTATCAGGCGCGATCGATATTGTTGCCTGAACTGTGGGAGCAACTATTTTCCCCACAACTTACCCATTTGAAGGCATGGCACGACAAAGAAGCTGAGATTTTAGCAACCACACCAAACAGAACAAGGAAGACAAAGCTTCTTCAACAAGTGTATAATGAACATTTGGATTCTGCTACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTTGAGTCTCCAGCTATTCCTTCCATTAGCATTCCATCAATATCTGTCGCAGCAAGTTCATTTGGTCATTCTTCAAACTCTGCTAGCTCCAACGAACCCTTCTCACCCCAGCCAATGATCAGCAAGAAACTTTATGATTCTGTCTTTGGTAGCTCCAGCAAAACCAAAGTTTATGACGCTCAGGATAACATAGAAATGTGTGTTTCAGGCTCTTATAGTTCTACTATTGTTAAACAAACGTTAACATATGAGTCTGAAACAACTAAATTTACAGATCAGGATATTGAAGATTTCGCTCTCGGTTTACCAATTGAAGCACTCCATCAGAAAGGAACTCAAGTTACAACAGCAGAAGAATTAAAGGAAAGGGGTATCAGCAATAACATTGACAAACCCTTCTCCACACAAACCTATTTAGACAGCCACATAGTGGATGCTCTATCATTTGGTAAGGAAGATGAACTTACTCTCATAAGGCCAAACAAGATGAGGTCTGCTCTTGCAGCATTATGTTCTCCAAGCATTCCAGACGAATTTATTTGTCCTCTTACGGGAACTGTCTTTGAGGAACCAGTCACCCTGGAGACTGGTCAAACCTTTGAAAGAGAAGCCATCAAGGCGTGGTTTGAGAAGGGAAACAGAACATGTCCGGTAACTGGAAATACTTTAGAATTTGTGGCTATGCCGCTTACCAACCTTATTTTGAAGCGTGTGATTGATAAATGGAAGTCAGAAAGTTTGGATCACCTTCTAAATCTTGCTTCTCAAACAGTGGGAAACTCAAAGGAATTTAATTCAAGAAATGATGAGGTTGCTGTTTTCAAATTGGAGAGTTTCCTGTCTTCTTTCAATGATGAGGAGAAAAGAACTTATGCCAAGTATCTCATCTCTTTAGGAGTTCTATCATTTCTTTTTAGGAGGTTTGAACTGGGAAATTTGGAGGAAAAATCACGTGTGGTGGCACTCTTGTTAATTTGTATTGTATCAGAATCTCGCTGCATATATCGGATAGCAGAAAATATCAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAGGATACTCCATTAACAAATGCAATATTATTGCTTACTGAACTTTCATCCATGAAGAGGAGAAAGGATGTTACATCATTCATTAGTGACTTGGTGGGTGAAGATGTTTTTAAAACACTTGGCATTCTACTCAAGTATCTTAACAAATCTACTTCACAAGAAAAGTCCCTAACCGCCGTTCTGTTGCTGCACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCAGTGAATGTCATTACGGCAGCACTTGATGCCAGCTTAAATGATGAGAAGGCCCGAGCGGAGTGTTGCAGAGCACTTCTAGTTTTGTGTGGGCACTTTTCCTCTGATGGGAGGATACTGACAAAGACTAGAACCTTTGAAGAAGCAGATTGCAATATCAACACATCGGAAGTAAGACTTCAAGGCCATGAAGAAGAGGGTCTACTGTGGGATCATGCAGCCACTTTGTCTGAAGATGAAGAAGCAATGGTAGAAGAGTTGTTAATGAAGTTGATAGAATCACTAGTTGGAAATGGAGAAAGCCCATTTTTGACCAACTTATGTAGATGCCTAGATTCTAGACACCTAGATTTGGTGAGGGAGTGTCTAGTAACGGTTAAATGGTTGAGCTCCTCACTCTCCAAGCTAATGAATGTGGGATTTCATCTTCCTGCCTTCTTAGCCCTCATCTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGACTCTTGCGTCAGTGTCCTTGCTTAATTTCAGTAAAATTTCAGAATGCAGAACTCTGTTGAAGACAATGGCAGAAGATATTGCACCCCTTCTTCATAGGCTTGTCGATGTAACATGGACTGCTAAGCAGCTGCATGCCATTGTGTCTGGGGGGAATCTGTAG 3009 0.4118 MASSLEELLAKEGFKGIRRVERTRSSFHGGALTEPRRLSLSTEGVTRIRTKSESSSFQGQSRRPRDKPFLREKIIHQRLNYEAAQKPCDNTIEVSNNAERGKEIPAMTNNNSSRTSFEDRNNKKNQDHYIHSASNLALDQVAVQAVVSILNGYMKRFLGDEDFRATLRHNCFSSLNFIELKEENNTETKIITSLEQAIETIEQTAEQSAPSTHLKRATMQLSIITGLSLNDLKHGCTCGIPNYKLSACAHLYLSVVYVIQRKSKVSAKHLLQVFCDSPYQARSILLPELWEQLFSPQLTHLKAWHDKEAEILATTPNRTRKTKLLQQVYNEHLDSATHIFAVYYKDWLTEGVESPAIPSISIPSISVAASSFGHSSNSASSNEPFSPQPMISKKLYDSVFGSSSKTKVYDAQDNIEMCVSGSYSSTIVKQTLTYESETTKFTDQDIEDFALGLPIEALHQKGTQVTTAEELKERGISNNIDKPFSTQTYLDSHIVDALSFGKEDELTLIRPNKMRSALAALCSPSIPDEFICPLTGTVFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGNTLEFVAMPLTNLILKRVIDKWKSESLDHLLNLASQTVGNSKEFNSRNDEVAVFKLESFLSSFNDEEKRTYAKYLISLGVLSFLFRRFELGNLEEKSRVVALLLICIVSESRCIYRIAENINRKCLLELLHSKEDTPLTNAILLLTELSSMKRRKDVTSFISDLVGEDVFKTLGILLKYLNKSTSQEKSLTAVLLLHFDLLVEPQKFSIYREVAVNVITAALDASLNDEKARAECCRALLVLCGHFSSDGRILTKTRTFEEADCNINTSEVRLQGHEEEGLLWDHAATLSEDEEAMVEELLMKLIESLVGNGESPFLTNLCRCLDSRHLDLVRECLVTVKWLSSSLSKLMNVGFHLPAFLALISQLKGILENGELELKTLASVSLLNFSKISECRTLLKTMAEDIAPLLHRLVDVTWTAKQLHAIVSGGNL 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03874 1002 MobiDBLite consensus disorder prediction 39 62 - -
Aip04g03874 1002 SUPERFAMILY RING/U-box 524 596 - -
Aip04g03874 1002 Gene3D - 597 998 IPR011989 -
Aip04g03874 1002 SUPERFAMILY ARM repeat 642 968 IPR016024 -
Aip04g03874 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 525 596 IPR013083 -
Aip04g03874 1002 Pfam U-box domain 526 596 IPR003613 GO:0004842|GO:0016567
Aip04g03874 1002 MobiDBLite consensus disorder prediction 98 121 - -
Aip04g03874 1002 MobiDBLite consensus disorder prediction 98 116 - -
Aip04g03874 1002 SMART Ubox_2 529 593 IPR003613 GO:0004842|GO:0016567
Aip04g03874 1002 PANTHER OS04G0584500 PROTEIN 1 999 - -
Aip04g03874 1002 MobiDBLite consensus disorder prediction 26 69 - -
Aip04g03874 1002 Coils Coil 830 850 - -
Aip04g03874 1002 PANTHER OS04G0584500 PROTEIN 1 999 - -
Aip04g03874 1002 CDD RING-Ubox_PUB 530 571 IPR045210 -
Aip04g03874 1002 ProSiteProfiles U-box domain profile. 525 600 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03874 Aip-Chr4 132965293 132969595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03874 526 641 U-box Gene Family AT5G42340 32.759 3.64e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03874 - - gmx:100820501 1216.06