Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03871 ATGGCATCAACATCTTGTGTGAGTAACATGCCATTACCCGCCACTACTATGACTTGGAACTCTCACCAAAATCCTGCACCACTTGCAAAGTATGAGGAGGTTACAACGAATCCCAAGCTTTTCATGAGTACTCTAGAGAAGCTCCATGCTGATATGGGAACCAAGTTCATGATACCCATTATTGGAGGAAAAGAACTGGATCTGTTTCACCTCTTCATTGAAGTGACTTCTCGAGGAGGGATTGAGAAGATTATCAAAGAGAGAAGATGGAAAGAAGTAACTCAAACTTTCAACTTTCCATCAACAGCTACAAATGCTTCTTTTGTGTTGCGCAAGTACTACTCTTCACTACTTTACCACTATGAACAAATTTACTACTTTAGAGCCGCAACTGGATGGAACCCTACTTTAACTGCTTCTTCTACTGCTGGTCCTTGTCTTGGCTTCCAACATTCAAGGGTTGATGCTACTGCCGAATCATCTCAAGGATCTGCAGCAGTAGTTGGAGTGATCGATGCAAAATTTGAAAGTGGATATCTGATTACAGTTTCAATAGGTTCAGAGGTGCTGAAAGGTGTACTTTATCAGGATCCACATCCACATCCACATCCACAGGGAGCATTTCAGAGTGTTATGGCCAAGAACACCAACAATAATTGTAATTCTTCATTGGGTGTTGTCCACCGTCGTCGTCGTAGGAAGAAATCAGAGATCAAAAGGAGGGATCCTGCTCATCCAAAACCTAACAGAAGTGGCTACAATTTCTTCTTTGCTGAGCAACATGCAAGACTAAAACCACTACACCAAGCCAAGGACAGAGAGATTAGTAGGATCATTGGTGAACTTTGGAACAAGTTAAAAGATCCCGAAAGATTAGTATATCAAGAGAAGGCTTTAAAGGATAAAGAGAGGTACAAAGCAGAAATGGAAGATTATCGCCAGAAACGCAACAATAATAATAATGCTGCTATGCTGCCATTGCAACAACAGCTTCCGGAAATGGATGAGAACGAGGAAGGCTCTCTTCAAAGTCAAACTCCTGAAGAGGAGAGCACTTCTGGTGGTAGCGAAAATGAGAATGATATTAACATGGATGCTTCTCTTCCTCTTCCTCCTGTTACTACTACTACACTGCCTCCTCAACCTACATTTTTTAGTTTAGACAAACCATCCATGGAAGGAGATTATAACCTTGGACATCAAAATATCCATGACTCAAAAAATATGTTGACAATGCTTTAG 1242 0.4114 MASTSCVSNMPLPATTMTWNSHQNPAPLAKYEEVTTNPKLFMSTLEKLHADMGTKFMIPIIGGKELDLFHLFIEVTSRGGIEKIIKERRWKEVTQTFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRAATGWNPTLTASSTAGPCLGFQHSRVDATAESSQGSAAVVGVIDAKFESGYLITVSIGSEVLKGVLYQDPHPHPHPQGAFQSVMAKNTNNNCNSSLGVVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHQAKDREISRIIGELWNKLKDPERLVYQEKALKDKERYKAEMEDYRQKRNNNNNAAMLPLQQQLPEMDENEEGSLQSQTPEEESTSGGSENENDINMDASLPLPPVTTTTLPPQPTFFSLDKPSMEGDYNLGHQNIHDSKNMLTML 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03871 413 CDD HMGB-UBF_HMG-box 246 310 - -
Aip04g03871 413 MobiDBLite consensus disorder prediction 228 253 - -
Aip04g03871 413 Gene3D High mobility group box domain 230 332 IPR036910 -
Aip04g03871 413 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 365 - -
Aip04g03871 413 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 365 - -
Aip04g03871 413 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 313 IPR009071 -
Aip04g03871 413 MobiDBLite consensus disorder prediction 335 363 - -
Aip04g03871 413 Gene3D - 14 131 IPR036431 GO:0003677
Aip04g03871 413 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Aip04g03871 413 SMART ARID_2 32 122 - -
Aip04g03871 413 SUPERFAMILY ARID-like 31 128 IPR036431 GO:0003677
Aip04g03871 413 SMART hmgende2 245 314 IPR009071 -
Aip04g03871 413 MobiDBLite consensus disorder prediction 335 388 - -
Aip04g03871 413 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Aip04g03871 413 Pfam HMG (high mobility group) box 246 313 IPR009071 -
Aip04g03871 413 SUPERFAMILY HMG-box 233 325 IPR036910 -
Aip04g03871 413 Coils Coil 295 322 - -
Aip04g03871 413 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Aip04g03871 413 SMART bright_3 36 127 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03871 Aip-Chr4 132944255 132945997 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03871 1 335 ARID Transcription Factor Family AT1G04880 56.389 1.87e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aip04g03871 ARID 3.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03871 - - cit:102613632 415.231