Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03870 ATGCCGGAGCTTCGTAGTGGACCGCGGCGTGGTCGTGCTCAGGTAGGCCGTAGAATCGCTGAACCACCGTCTCCGGCGGCCAACTACGTGAAGACTCGAGCTGCGGTCGCCAGGGCGGCTGCGGCAGCGGCGACGGTTCAAGTGGGAGGATCACCTGTCTACAAGGTGGATAGGAAGCTGGGCAAAGGTGGCTTTGGTCAAGTCTTTGTTGGCCGTCGAGTTACCGGGGGTAATGATCGTACTAGTGGCCCTGGGGCTACTGAGGTGGCTCTAAAATTTGAACATAGGAATAGTAAAGGCTGTAATTATGGCCCTCCTTATGAGTGGCAAGTTTACAACACCCTTGGTGGCAGTCATGGAATACCAAAGGTACACTATAAAGGAAGACAAGGAGAATATTATGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTGTGGAACTCTTCAAGCCAGGCGATGCCTGCAGAAATGGTTGCATGTATAGCTGTTGAGTCCTTGTCAATCCTGGAGAAAATGCATTCAAGAGGATATGTGCATGGAGATGTAAAGCCAGAGAACTTTTTACTAGGCCAGCCAGGGACACCACAAGAGAAGAAATTGTACCTTGTTGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGTCCAGATATGTTTAGAGGGACTGTTCGATATGCAAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTGGCATATACACTCATCTTCCTTCATAAAGGGCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAGTCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCAGAGATGCTCTGTTGCTTCTGCCCTCCTCCTTTTAGGCAATTTCTTGAGATTGTAGTGAACATGAAATTTGATGAAGAACCAAACTATTCCAAGCTAATCTCTCTTTTTGATGGTATGCTTGGTCCAAATCCTGCATTGCGGCCGATTAACACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATATTGAGGACGAGGATGATTCACAACCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCCAGACTACCAATGAAACAAAGGTATCACTATAATGTAGCTGATGCAAGACTAGCACAGCATGTTGAGAGAGGGATTGCAGATGGCCTTCTTATTAGTTGTGTTGCATCTTGTTCCAATCTCTGGGCGCTTATTATGGATGCTGGAACTGGTTTTACAACTCAAGTTTACAAGTTGTCACCATTTTTCTTGCACAAGGAATGGATTATGGAGCAGTGGGAAAAGAACTATTATATTACTTCAATAGCTGGCGCTAATAATGGAAGCTCTCTTGTGGTGATGTCAAAAGGCACGCAGTACACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTCACCTCGATGGCCACTGCCGGAAGTCGCTGGGGTGTTGTTATGTCTAGAAATGCTGGATTCAGTGATCAGGTTGTTGAGCTTGATTTTCTCTATCCTAGTGAGGGCATCCACAGACGATGGGATAATGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATATTAAGTATTCCAAGGCGCAGGCCAGGTGATGAAACTCAGGAAACACTACGCACATCTCAATTTCCCAGCACACACGTTAAGGAAAAATGGTCAAAGAACCTTTATCTTGCTTGTTTGTGCTATGGGCGCACTGTATGCTGA 1851 0.456 MPELRSGPRRGRAQVGRRIAEPPSPAANYVKTRAAVARAAAAAATVQVGGSPVYKVDRKLGKGGFGQVFVGRRVTGGNDRTSGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMPAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTPQEKKLYLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEIVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRGRLNIEDEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVASCSNLWALIMDAGTGFTTQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03870 616 SMART serkin_6 54 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03870 616 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 30 587 - -
Aip04g03870 616 SUPERFAMILY Protein kinase-like (PK-like) 54 337 IPR011009 -
Aip04g03870 616 ProSiteProfiles Protein kinase domain profile. 54 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03870 616 MobiDBLite consensus disorder prediction 1 24 - -
Aip04g03870 616 Pfam Protein kinase domain 54 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03870 616 Gene3D Transferase(Phosphotransferase) domain 1 24 373 - -
Aip04g03870 616 PANTHER CASEIN KINASE-RELATED 30 587 - -
Aip04g03870 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Aip04g03870 616 CDD STKc_CK1 54 329 - -
Aip04g03870 616 ProSitePatterns Protein kinases ATP-binding region signature. 60 92 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03870 Aip-Chr4 132935566 132940311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03870 54 211 EF-hand Containing Proteins AT4G36070 28.313 7.69e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Aip04g03870 Pkinase 1.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03870 - - gmx:100819969 1153.66