Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03841 ATGAAGATTAACGTGAAGACCCTTAAAGGAACTCACTTTGAAATCCAAGTGCAACCCCAAGACACGGTTGCTGATGTGAAGAGAAATATAGAGAGAGAACAAGGTGCTGAAGTTTATCCAGCTGCACAACAAATGCTTATTCATCAGGGGAAAGTGCTTAAGGATGACACAACCCTTGAAGACAATAAAGTTGCTGAGAATAGTTTTGTGGTGATTATGCTATCCAAGGTGATTACTGATGATTGGTGTTATTCTACTTTTGGATTGAATTCTGAACCGGCGAGTTCTTTGCCTCCCACTTCATTGCCATCCTCAACATCTCAACCTCCTGCTTCAACTGTAGGACAGGGAGTATCCAATTCTGAGCAAAATCCTGTTACAACTCCTGCCAGTGATGTGGCCGGCATTTATGGCCAAGCAGCATCAAACCTCATTTCAGGAAGCAATTTAGAATCGACTATTCAACAGATTCTAGACATGGGGGGAGGTAGTTGGGATCGAGATACTGTTATCCGTGCTCTTCGTGCAGCATTTAACAATCCTGAAAGAGCTGTTGAGTATCTCTATTCGGTAAGTATTTCTTGA 585 0.4239 MKINVKTLKGTHFEIQVQPQDTVADVKRNIEREQGAEVYPAAQQMLIHQGKVLKDDTTLEDNKVAENSFVVIMLSKVITDDWCYSTFGLNSEPASSLPPTSLPSSTSQPPASTVGQGVSNSEQNPVTTPASDVAGIYGQAASNLISGSNLESTIQQILDMGGGSWDRDTVIRALRAAFNNPERAVEYLYSVSIS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03841 194 Gene3D - 1 77 - -
Aip04g03841 194 MobiDBLite consensus disorder prediction 94 131 - -
Aip04g03841 194 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Aip04g03841 194 SMART uba_6 150 190 IPR015940 -
Aip04g03841 194 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 190 - -
Aip04g03841 194 SMART ubq_7 1 75 IPR000626 GO:0005515
Aip04g03841 194 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 148 191 IPR015940 -
Aip04g03841 194 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Aip04g03841 194 SUPERFAMILY UBA-like 146 190 IPR009060 GO:0005515
Aip04g03841 194 PANTHER UBIQUITIN RECEPTOR RAD23D-LIKE ISOFORM X1 1 190 - -
Aip04g03841 194 Pfam UBA/TS-N domain 150 188 IPR015940 -
Aip04g03841 194 Gene3D - 143 191 - -
Aip04g03841 194 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Aip04g03841 194 MobiDBLite consensus disorder prediction 94 130 - -
Aip04g03841 194 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03841 Aip-Chr4 132664230 132666241 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03841 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.838 5.76e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03841 K10839 - gmx:100817821 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03841 04 132664230 132666241 Aip04g03841 04 132664230 132666241 ECH