Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03829 ATGGCAACAACGTCAATGGCGGGTGTTTCTGTTTCTGGGTTCCACAATCACCATTTTGCTTCTTCCAACTCAAACGCCGCCACAATTTCTTCTTGGAAGCCTGTGGTGGCTGTTCTCAGCAACAAGAACAAGATGAGGGTCCCTTTTGAGCTGAAGCAGGGGCAGTCTCGTATCTTCCACGAGCTTCCCTCTGGGCTAAGCATGGAGGTGATTGTGCAGAAGAAGAAGAAGAAGAATGTTGAAGGAGAAGAAGAGAAAAAGTCACCTTTGGTTTTTGTTCATGGAAGCTACCATGCTGCTTGGTGCTGGGCTGAACATTGGTTACCTTTCTTTTCAGCTTCTGGCTTTGATTGCTATGCTCTTAGCCTCTTAGCACAGGGTGAAAGTGATGTACCCGATGGTTCGGTCGCTGGTACGCTCGAGACACATGCAAGAGATATTGCAGATTTCGTTCATCATAAAGTTCAGTCACCACCTATCTTGGTTGGACATTCATTTGGAGGACTTATCATTCAATATTATATCTCCTCTTTGGGAAGCAACAACCTTGAAGAAAATACATATCCAAAGCTTAGAGGAGCTATCCTTGTCTGCTCTGTGCCTCCTTCTGGTAACAGTGGTCTTGTCTGGCGATATCTCTTTACCAAGCCAATTGCTGCCTTCAAGGTGACACGCAGCTTGGCAGCGAAAGCTTTTCAAACCTCTCTTCCTCTGTGTAGAGAGACATTTTTCTCAGCCACAATGGAGGATCATATTGTTAAAAGATATCAAGAGCTAATGAAAGAAAGTTCGAGATTGCCATTGTTTGATTTAAGAAAGCTGAATGCATCACTTCCGGTTCCTTCGGCGCCAAACTGCCCTGTCGATGTCCTTGTTTTGGGTGCGAAAGATGACTTCATTGTGGACGCCGAAGGACTCAATGAGACGGCGAAGTTTTACAGTGTGCCGCCGGTTTGTGTTGATGCCGTTGCGCATGACATGATGTTGGACGTTTCATGGGAAAAAGGAGCAAAAGTTATTCTGTCATGGATTAATGGTTTGGACAACTCAAGGACTGCAACTGCACATCTCGGCAACGATTCGAGATTGACCAAAATGTTCACCTCAAGGAAGAAAATCCACAAGGATAATGATGCTGAACCCACTGAGTTTGAGGAGACAGCTGCACAGTACTTGTTTGATTTGGAGAACACTAATCAGGACCTGAAAAGTGATTTGAAAGATCTCTACATAAACCAGGCAATTCAAATGGACGTGGCTGGGAATCGCAAGGCTGTGGTCATCTATGTTCCTTTCAGATTGAGGAAATCGTTCCGCAAGATTCATCTTCGTCTTGTCAGGGAGCTTGAGAAGAAGTTTAGTGGGAAGGAAGTTGTGTTGATCGCCACAAGAAGGATCGTGCGTCCTCCAAAGAAAGGATCTGCTGTTCAGCGGCCCCGTACCCGCACTTTGACTGCTGTGCATGATGCTATTCTTGAAGACGTAGTTTATCCTGCCGAGATTGTTGGCAAACGAGTCAGATACAGACTCGATGGATCAAAAATAATCAAAGTTTTCTTGGATCCGAAGGAACGCAACAACACCGAATACAAGCTGGAGACTTTCTCTGGAGTTTACAGGAAGCTTACCGGAAAAGATGTATCTTTTGAGTTTCCAATCGCAGAAGCCTAG 1671 0.4518 MATTSMAGVSVSGFHNHHFASSNSNAATISSWKPVVAVLSNKNKMRVPFELKQGQSRIFHELPSGLSMEVIVQKKKKKNVEGEEEKKSPLVFVHGSYHAAWCWAEHWLPFFSASGFDCYALSLLAQGESDVPDGSVAGTLETHARDIADFVHHKVQSPPILVGHSFGGLIIQYYISSLGSNNLEENTYPKLRGAILVCSVPPSGNSGLVWRYLFTKPIAAFKVTRSLAAKAFQTSLPLCRETFFSATMEDHIVKRYQELMKESSRLPLFDLRKLNASLPVPSAPNCPVDVLVLGAKDDFIVDAEGLNETAKFYSVPPVCVDAVAHDMMLDVSWEKGAKVILSWINGLDNSRTATAHLGNDSRLTKMFTSRKKIHKDNDAEPTEFEETAAQYLFDLENTNQDLKSDLKDLYINQAIQMDVAGNRKAVVIYVPFRLRKSFRKIHLRLVRELEKKFSGKEVVLIATRRIVRPPKKGSAVQRPRTRTLTAVHDAILEDVVYPAEIVGKRVRYRLDGSKIIKVFLDPKERNNTEYKLETFSGVYRKLTGKDVSFEFPIAEA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03829 556 Pfam Ribosomal protein S7e 372 551 IPR000554 GO:0003735|GO:0005840|GO:0006412
Aip04g03829 556 PANTHER 40S RIBOSOMAL PROTEIN S7 311 556 IPR000554 GO:0003735|GO:0005840|GO:0006412
Aip04g03829 556 ProSitePatterns Ribosomal protein S7e signature. 444 457 IPR000554 GO:0003735|GO:0005840|GO:0006412
Aip04g03829 556 Gene3D alpha/beta hydrolase 68 345 IPR029058 -
Aip04g03829 556 PANTHER 40S RIBOSOMAL PROTEIN S7 311 556 - -
Aip04g03829 556 SUPERFAMILY alpha/beta-Hydrolases 82 346 IPR029058 -
Aip04g03829 556 Coils Coil 392 412 - -
Aip04g03829 556 Pfam Alpha/beta hydrolase family 90 302 IPR000073 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03829 Aip-Chr4 132548905 132554539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03829 366 556 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 78.010 1.82e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03829 - - aip:107638205 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip04g03829 04 132548905 132554539 Aip04g03829 04 132548905 132554539 ECH