LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip04g03820	ATGAGTGATTCTACTTCTTCATGTTTGGCCATTGCGGAGAAGAAGGCACAGAAGCCAGGTGGCTGTTCTGGCATTTTCTTTCAGCTCTTTGAATGGAAGAGGAAGCTTGCAAAGAAGAAGCTCTTCTCTAAGAAGCTTCTGCCTCCTGCTCGTGCTAAAAGGTTTAAGGGAGATGAAAAAATGCCAAATTCCAAGATCCACTTGATTGCTAATGAGAATAGTGGAGGTTTCCCAAGTGCCAAGAAAGGTGGGAATTATGGCTTTGAGGTGATAGTGCCACAAAAGAGCGAAATGCGAGCTCCCGGTCTGGTAGCTAGATTGATGGGCCTAGAATCTATTCCGGCTTCAAAGCGTGATAAGTCCAAGAAAGGTTTGCATTTGGATGATTTTGGTGATAATGAGAAGGAGTGTAAGAGTAATTGTGAGTTAGATAGACAAGGCATGGATTCGGAAATAGTGGTTATGAAGCATGATTCAAGACCTGAGAAGCTTCAGAAGACCGGGACGGATGAGAGACGGGCAGTGACGAGGTTTGGAGCCGAGGCCTTGCAAATTAAGCATGTTTTGGCCAGAGCAAGAAAGTATCATCATCATCATCATCATCATCACCATCCAAAGCTTGCATCTCAGTTGATGAGCCCAAGAATTCCTTCAACGAAGAGTGCCTCTCGAAGCTCTAGGTTGATAGGAGCAGCTACTAGAATTTTGGAACCTGGATTACAGGCTAGAAGCAGAGCTAAAGGTTCTCTTCTCACATATCATGGTTCGGCATTTCCTCCTAAAACCAGCATTGTGACAAATTGTGAGGGACCTAGTTCGGCCGTTGTGCAAAATCAACTTGACTATGATGCAAGCACAGCCAAGCCTTTGATGGGGCAGACTTCTTGCAAAAATTGTGGTAATTTAGTTGATGTTGTTGACTGCAAGCTGGATGTTCCTTTACCTGTTGTGTCAGATGTGTTTGCAACAACCTCTGTGGTATCATCACAGAAGAATGGTAGGTTCTTCACTCCCTCTCCCTCTCCCTCTCATGAACAAGAAAGAGAAATTGTTCTTCTAAGAAGTCAGGAAAAGCTCATGTCTCTTGCTACTGAGAAAGAAGGAATGGATAATGTGCATCAATTTTGTAACAAACACATCACCAAGAGAATGACAGTGCCCCGTGACGGTCCAGATATCTGGAACCCATCGAGCCAATCAGTTAGTACTGGAGAGGGTGATGCATCTTCCTCTGCATTAAAGCACAAACCGCAAACACAAGAACGAATGTTGAGCAACGAAAGAAGTTCATCTGCTTCTACAATGAGTAATACAGGAGTAAAAAGAATGTCATCATCTACAAGCAGTGTGAATGAGACTAAAGACTTTGTTGCTCTGAATAGAAGCCTAAGTGGTCAAGTGAGGATCAGGTCACCCACCAAAGTAGATAGTTCCAAATTCGACCTTGAGAAAAAACCAAGTTTTAGTCAGAACAAATCCTTGTCTGATGTAAGGACATTAGAGAGAAAAAGAAGAACCTCAAATGTCATGCAAGGTAAAAGTACAGCTCCTTGTTCAGCTGGAGTGAGTCAGAGAAATCTTCGATCCGATGCACTTGTCGGGAAACAAAAGGGATTCGTCGCATCCTCCTGGAATTGTGCTAACATCAAAAGTAAACAATGCAGCAAGGAGAAAACAGTGAAGGTTAATGACAACAAAACCAATGAGGTGGTTTCTTTTACATTTAATTCTCATTTGAAGCAAAAGATAGGGATAGATTCTGAGAAGGAAGAGATAAGCAACAATATTGAGAGGAAGACATGCTTCCAAAGACCTTCGCCCTTGCGAGTTGATGGGTTAAGTGCCTTTCTAGAACAAAAGTTGAAAGAATTAACTTCTCAAGAAGATTATGATTTGGCTACAGGTACTCCATCAAAAAAATCAACTGCAATGATTCTTCAGGAGCTGATATCTGCTCTAAGTTCAGAGAGACTGATTTGCTGCAATGGTCATATGTTTGATGAAAACTTCCGGTTTCATAATGGGCCAAGACAAGAAGCGATATTCGGAGCTTCTTGCAATGGTAATCACCACAGTCCTGGATCAGTTCTTGAAGCTTCCTTTTCTTCTAGTAGTTTGGATGAAAGCTCAGTTTCAGGGCAGGGTTATCACCCTTACTCCATGAATAACTCTTATGATCAGCTGGAACAATTGGAACATGATGCTGAACTCACAGATTCTGCAACAACATCTGTAAACAAAGGGAGAGTAGTTTGTGAGCTACTGATTGATCTTGTCAACCAAATTCCCGGACCATTACAAAGCTTATATTCTTTTGGGCCAAGTTTGACAAGAAGCAAGCTCACTCATATGAAAGATGTTATCTTGAATGCTGAATTGGTTATCGGAATCGACACTGACGAAGACCCGGAACTAGTAGTTCATCGGTTCCTCCTCGACGAACTGGACACCATGGCAAGTGATATTATGTGGAGAAATTTTAATCTCTTCCTGGGCTGCACCGATTCTAGGCATCAAAACAAACTCAAGGGGTTCCTCTTTGATTGTGTTATAGAATATCTAGAATCAAATTGCTGCCGTTATCTTGAGTGTGGATTCAAGCTATGGTGGACTAAATTGCAGCAATGCTTGAAGTCCAAGGTGTTGGCTCAGGAGGTAAAGACAGAGATCGAAAAATGGGGGAGCATGTCTGGGATGGAACATGATGAAATAATAGAATGGGAAATGAGCTACTCTTTGGGGAAATGGATAGATTTTGATATTGAAACATTTGAGGCTGGTGTTATGATAGATAGGTGCATATTTCAAAGTTTGTTGGATGAAATTGTTCAAGACCTTGTAGTAGGTTGCAAACACCAGCATTGTTCATCATGCAATATCTATCTCCCTATCACTAATAGTCATTGCTAG	2910	0.4182	MSDSTSSCLAIAEKKAQKPGGCSGIFFQLFEWKRKLAKKKLFSKKLLPPARAKRFKGDEKMPNSKIHLIANENSGGFPSAKKGGNYGFEVIVPQKSEMRAPGLVARLMGLESIPASKRDKSKKGLHLDDFGDNEKECKSNCELDRQGMDSEIVVMKHDSRPEKLQKTGTDERRAVTRFGAEALQIKHVLARARKYHHHHHHHHHPKLASQLMSPRIPSTKSASRSSRLIGAATRILEPGLQARSRAKGSLLTYHGSAFPPKTSIVTNCEGPSSAVVQNQLDYDASTAKPLMGQTSCKNCGNLVDVVDCKLDVPLPVVSDVFATTSVVSSQKNGRFFTPSPSPSHEQEREIVLLRSQEKLMSLATEKEGMDNVHQFCNKHITKRMTVPRDGPDIWNPSSQSVSTGEGDASSSALKHKPQTQERMLSNERSSSASTMSNTGVKRMSSSTSSVNETKDFVALNRSLSGQVRIRSPTKVDSSKFDLEKKPSFSQNKSLSDVRTLERKRRTSNVMQGKSTAPCSAGVSQRNLRSDALVGKQKGFVASSWNCANIKSKQCSKEKTVKVNDNKTNEVVSFTFNSHLKQKIGIDSEKEEISNNIERKTCFQRPSPLRVDGLSAFLEQKLKELTSQEDYDLATGTPSKKSTAMILQELISALSSERLICCNGHMFDENFRFHNGPRQEAIFGASCNGNHHSPGSVLEASFSSSSLDESSVSGQGYHPYSMNNSYDQLEQLEHDAELTDSATTSVNKGRVVCELLIDLVNQIPGPLQSLYSFGPSLTRSKLTHMKDVILNAELVIGIDTDEDPELVVHRFLLDELDTMASDIMWRNFNLFLGCTDSRHQNKLKGFLFDCVIEYLESNCCRYLECGFKLWWTKLQQCLKSKVLAQEVKTEIEKWGSMSGMEHDEIIEWEMSYSLGKWIDFDIETFEAGVMIDRCIFQSLLDEIVQDLVVGCKHQHCSSCNIYLPITNSHC	969

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip04g03820	969	PANTHER	DNAA INITIATOR-ASSOCIATING PROTEIN	8	947	-	-
	Aip04g03820	969	MobiDBLite	consensus disorder prediction	385	451	-	-
	Aip04g03820	969	MobiDBLite	consensus disorder prediction	392	451	-	-
	Aip04g03820	969	Pfam	DUF761-associated sequence motif	94	119	IPR032795	-
	Aip04g03820	969	Pfam	Domain of unknown function (DUF4378)	804	941	IPR025486	-
	Aip04g03820	969	PANTHER	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED	8	947	-	-
	Aip04g03820	969	MobiDBLite	consensus disorder prediction	469	522	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip04g03820	Aip-Chr4	132438284	132442710	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip04g03820	1	946	TRM (TON1 Recruiting Motif) Superfamily	AT1G67040	31.385	5.07e-86	292

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip04g03820	-		-	aprc:113861902	1117.45

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip04g03820	04	132438284	132442710	Aip04g03820	04	132438284	132442710	ECH

Showing 1 to 1 of 1 entries