Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip04g03810 ATGGCATACCTGAAATCAAGATCCAAAAATGACATTATTAGTTTGTGCATGCTTCTGCTTTGCTTGGGTTGTGTTGAGTCCAACGATGGTGAAGGTGCATACATGTTGAAGCTTATGAATGCACTCAAACCCCCTGGCTGGTCCAACAAGAAGCCAGTTTGCCAGTGGACTGGGGTGTATTGCGACTATCAAAGTGGAAGGATTGAAGAGATCGATCTCAGTTCAAAGTCGCTGACGGGAACAGTTCCTGCAGGCCTCAACGACTCCCTCTCCCAACTCACAGAACTCGATCTCTCCCAGAATAATCTGAGTGGTCCTGTTCCCTCTCTCGCCAACCTCTCCTTCCTCCAATACGTATACCTCGGCTACAACAACTTCACCTCCATTCCTCATGGTTGCTTCCATGGTCTTACTAGTTTGCAGATCTTGAGATTGAGAAACAATATCAACCTCCCACCATGGAACTTTCCTACCGATTTGACTGCTCACTCCTCCCAACTCCAGCTCAATCTTGTTGCTACAAATGTCATGGGCCCTCTACCAGAAATATTTGACTCCTTGACAAGTTTGGAGACTGTTGTTCTCTCCAACAACAGCCTCACTGGTGTCTTGCCGGAGTCTTTTGGAAGGTCCAAGATTGCCACCTTGCATCTCAACAACCAGAAGGATGAGGGGTTGTCAGGTCCAATTGATGTCCTCTCAAACATGCTCGACTTATCTCAAGTGTGGCTTCAGGGGAACTCGTTTACAGGACCTATTCCTGACATGTCTCGTTGCACTGCTTTACAAGATTTACAACTTGCCCACAATCAATTAACAGGTGTGGTCCCAGATTCTCTCATCGTTCTTCCAAAGTTAGAAGATTTTTATTTGGACTATAACTTTTTGCAAGGTCCTCTACCAAATATTATTACCTTCAGTCTTTTTGAAACGTCGAATCTAGGTGTTAACACCACAAATGGTTTCTGTCACAAAGATCCAGGACCTTGTGATCACAAAGTGACCATTTTGCTTGAAATTGCTGCGAAATTCAAGTATCCAATTCTGTTGGCACGTTCATGGAGAGGAAATAATGCCTGTAAAAACTGGAGTTTCATTACATGTGATGACAAAAATAAGATTAGAATGGTCAATTTATCAAATCTAAAATTGACGGGCACAATCTCACCTGTATTTGCCAATTTAACTAATTTGCGGGAATTGTATTTGGATGGGAATAATTTGACGGGTGAAATACCTGAAGGATTGACAACATTGCATGAACTTGAGGTTGTGAATGTCTCTAACAATCACCTTGCTGGAAATATTCCCAAATTCTCACCAAAGGTCAACTTTATTGCCACAGGCAATGATTTTCTTGTGCTTCCTTCTAATGGTTCCGACCATACACCAAGGCCAATCCCAACTGCTTTGATTACAGTTATATCGATAGCTAGTGCTGGAGTTATTATGATCCTTGTTCTGGTTATTTACAACCGCAAGAGGTGTCTTAATTTAATCTATGGGATTATCTTCAAGACAACATACAATGATCACCACATTGAGGATTTTATAAAAGGTTATGAATTTTTGGCACCAAAGCGATTTAGTTATTCCGAAGTGAAAAGAATGACAAATTTATTTCGTGATAAACTAGGACAAGGTGGATATGGCACCGTATACAAAGCACGTTTAACTAATGGTCGTCAAGTTGCAGTGAAGATATTAACTGAGTCTAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGTATTAGTAGGACATCTCATGTGAATATTGTCTCACTCTTAGGATTTTGTTATGATCAAGGCAAAAGAGCACTTATTTATGAATTCATGTCTAATGGTTCTCTAGATAGATACATCTACAAAGCAGAATCTTCTAAGGCTTTTTGTAGTTTGGATTGGAGTATTTTGCATAACATTGCAATTGGTATTGCTCAAGGGTTAGAATACTTGCATCAAGGATGCACAACAAAAATTTTGCATCTTGATATAAAACCTGAAAATATTCTTCTAGATGAACATTTCTGTCCAAAAATCTCAGATTTTGGACTAGCTCGAATCTGTCAAAAGAAAGAGAGTAATGTATCTATTTTAGGCACAAGAGGAACTCCAGGTTACATTGCACCAGAAATCTTTAGTCGAGCATATGGTAGAATTTCTGATAAATCTGATGTATATAGTTATGGTATGTTGATTCTTGAGATGTTCGGAAAAAGAAACAACTTCAACAATAAAGAATCACATCGCAGTGAAATGTATTTTCCTGACTGGATATATGAGGATCTTGACCAAGGTAATATTTTTGGTAGACATTCCGATATCTCAGATGAAGATAATGATATGATAAAGAAGATTATATTAGTAAGTTTGTGGTGTATTCAACCAAATCCATCACATAGGCCATCAATGAATAAAGTTGTAGAAATGTTACATGGAGAACTTGAGTCTGTGCCATTTCCTCCAAAGCCTGTGATGTATTCTCCTGAAAGGTCTCTGTTAAAAACTTTAGATATATCTTCCGAACCTGTTTCATTCCCCAACCCAAGCCATACTGATACTAAAGCAAACCCAAGCCCTATCCCCAATTCTATTCCAAACCCTCCTGAAATCATCCCTGACCCTATTCGAAATCCTATTGATGCTAACACAACCCCTAATCCAAATCTTACTAAGACTTATGTCAAACCCATTCTTAAGCCCAAATCTAACCTGAAGTCCAAGTCCAAGTCAAAGCCAAACCCTGCATCCATCTACAAACCAAAACTTATCCAAAAGCCCATTCAAAAGCCCAAACCAAATCTGAAGTCCAAACTGAAAGAGACTACCAAGAGTAGCTCCATAGAAGGCAAAAGCAAATCAAATTTGAAGTCGAAACTTCAGTTCTTATCTAGGAGAATTACAAGATCTCAAGCTGTTAGAACATATGGAAAGTCTGCTAATAAGGGAAGGAAGTTCTTCATGTTGATTTAA 2979 0.3911 MAYLKSRSKNDIISLCMLLLCLGCVESNDGEGAYMLKLMNALKPPGWSNKKPVCQWTGVYCDYQSGRIEEIDLSSKSLTGTVPAGLNDSLSQLTELDLSQNNLSGPVPSLANLSFLQYVYLGYNNFTSIPHGCFHGLTSLQILRLRNNINLPPWNFPTDLTAHSSQLQLNLVATNVMGPLPEIFDSLTSLETVVLSNNSLTGVLPESFGRSKIATLHLNNQKDEGLSGPIDVLSNMLDLSQVWLQGNSFTGPIPDMSRCTALQDLQLAHNQLTGVVPDSLIVLPKLEDFYLDYNFLQGPLPNIITFSLFETSNLGVNTTNGFCHKDPGPCDHKVTILLEIAAKFKYPILLARSWRGNNACKNWSFITCDDKNKIRMVNLSNLKLTGTISPVFANLTNLRELYLDGNNLTGEIPEGLTTLHELEVVNVSNNHLAGNIPKFSPKVNFIATGNDFLVLPSNGSDHTPRPIPTALITVISIASAGVIMILVLVIYNRKRCLNLIYGIIFKTTYNDHHIEDFIKGYEFLAPKRFSYSEVKRMTNLFRDKLGQGGYGTVYKARLTNGRQVAVKILTESKGNGEEFINEVASISRTSHVNIVSLLGFCYDQGKRALIYEFMSNGSLDRYIYKAESSKAFCSLDWSILHNIAIGIAQGLEYLHQGCTTKILHLDIKPENILLDEHFCPKISDFGLARICQKKESNVSILGTRGTPGYIAPEIFSRAYGRISDKSDVYSYGMLILEMFGKRNNFNNKESHRSEMYFPDWIYEDLDQGNIFGRHSDISDEDNDMIKKIILVSLWCIQPNPSHRPSMNKVVEMLHGELESVPFPPKPVMYSPERSLLKTLDISSEPVSFPNPSHTDTKANPSPIPNSIPNPPEIIPDPIRNPIDANTTPNPNLTKTYVKPILKPKSNLKSKSKSKPNPASIYKPKLIQKPIQKPKPNLKSKLKETTKSSSIEGKSKSNLKSKLQFLSRRITRSQAVRTYGKSANKGRKFFMLI 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip04g03810 992 Gene3D Ribonuclease Inhibitor 332 454 IPR032675 -
Aip04g03810 992 Gene3D Transferase(Phosphotransferase) domain 1 614 820 - -
Aip04g03810 992 SMART LRR_sd22_2 90 115 - -
Aip04g03810 992 SMART LRR_sd22_2 395 418 - -
Aip04g03810 992 Gene3D Ribonuclease Inhibitor 29 320 IPR032675 -
Aip04g03810 992 MobiDBLite consensus disorder prediction 843 862 - -
Aip04g03810 992 SUPERFAMILY Protein kinase-like (PK-like) 521 813 IPR011009 -
Aip04g03810 992 Pfam Leucine rich repeat N-terminal domain 31 62 IPR013210 -
Aip04g03810 992 Pfam Leucine rich repeat N-terminal domain 336 369 IPR013210 -
Aip04g03810 992 SUPERFAMILY L domain-like 52 440 - -
Aip04g03810 992 SMART serkin_6 539 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03810 992 MobiDBLite consensus disorder prediction 843 959 - -
Aip04g03810 992 PANTHER OSJNBA0070M12.3 PROTEIN 17 814 - -
Aip04g03810 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Aip04g03810 992 SMART LRR_typ_2 187 210 IPR003591 -
Aip04g03810 992 SMART LRR_typ_2 113 136 IPR003591 -
Aip04g03810 992 SMART LRR_typ_2 90 112 IPR003591 -
Aip04g03810 992 SMART LRR_typ_2 395 419 IPR003591 -
Aip04g03810 992 CDD STKc_IRAK 545 813 - -
Aip04g03810 992 Pfam Leucine rich repeat 111 148 IPR001611 GO:0005515
Aip04g03810 992 Pfam Leucine Rich Repeat 397 416 IPR001611 GO:0005515
Aip04g03810 992 ProSitePatterns Protein kinases ATP-binding region signature. 545 567 IPR017441 GO:0005524
Aip04g03810 992 ProSiteProfiles Protein kinase domain profile. 539 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03810 992 PANTHER RECEPTOR-LIKE KINASE TMK4 17 814 - -
Aip04g03810 992 MobiDBLite consensus disorder prediction 863 877 - -
Aip04g03810 992 Gene3D Phosphorylase Kinase; domain 1 515 613 - -
Aip04g03810 992 Pfam Protein kinase domain 543 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip04g03810 992 ProSiteProfiles Leucine-rich repeat profile. 92 114 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip04g03810 Aip-Chr4 132336465 132344955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip04g03810 507 853 Receptor kinase-like Gene Family AT5G38280 55.556 1.01e-128 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Aip04g03810 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip04g03810 - - aip:107637472 1166.37